RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA864829" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA864829 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27915941 27915941 PRJNA864829_S_NODE_14685_length_169_cov_1.350000_g14599_i0 PRJNA864829 14685 169 1.35 2.2815 Mycoplasma 2093 Bacteria Bacteria 83.2 6.92e-17   NR WP_014858110.1 141391 g14599 i0 74.5 1.97041420118343 55 14 97.6 0 2 166 71 125 WP_014858110.1 signal recognition particle receptor subunit alpha [Candidatus Mycoplasma haematolamae] diamond 333 84 0.990476190476191 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Candidatus Mycoplasma haematolamae
28728937 28728937 PRJNA864829_S_NODE_13987_length_172_cov_1.308943_g13901_i0 PRJNA864829 13987 172 1.308943 2.25138196 Mycoplasma wenyonii 65123 Bacteria Bacteria 48.5 1.33e-4   NR WP_112664956.1 65123 g13901 i0 73.1 0.453488372093023 26 7 45.3 0 62 139 236 261 WP_112664956.1 DUF3713 domain-containing protein [Mycoplasma wenyonii] diamond 78 48.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
29454710 29454710 PRJNA864829_S_NODE_6110_length_245_cov_1.367347_g6024_i0 PRJNA864829 6110 245 1.367347 3.35000015 Mycoplasma wenyonii 65123 Bacteria Bacteria 68.2 4.06e-11   NR WP_146737515.1 65123 g6024 i0 61.7 0.575510204081633 47 18 57.6 0 67 207 127 173 WP_146737515.1 hypothetical protein [Mycoplasma wenyonii] diamond 141 68.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
31319011 31319011 PRJNA864829_S_NODE_11075_length_191_cov_1.507042_g10989_i0 PRJNA864829 11075 191 1.507042 2.87845022 Mycoplasma wenyonii 65123 Bacteria Bacteria 110 3.3e-26   NR WP_112664982.1 65123 g10989 i0 92.1 0.989528795811518 63 5 99 0 189 1 128 190 WP_112664982.1 RNB domain-containing ribonuclease [Mycoplasma wenyonii] diamond 189 110 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;