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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA864829" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA864829 · 13 ✖

analysis 1

  • diamond · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26674976 26674976 PRJNA864829_S_NODE_10281_length_197_cov_1.804054_g10195_i0 PRJNA864829 10281 197 1.804054 3.55398638 Dama dama 30532 Chordata Chordata 107 1.95e-25   NR XP_060991375.1 30532 g10195 i0 78.5 0.989847715736041 65 14 99 0 2 196 89 153 XP_060991375.1 syncytin-2-like [Dama dama] diamond 195 107 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Dama Dama dama
27118103 27118103 PRJNA864829_S_NODE_6702_length_236_cov_2.272727_g6616_i0 PRJNA864829 6702 236 2.272727 5.36363572 Callorhinus ursinus 34884 Chordata Chordata 46.2 0.00188   NR XP_025706513.1 34884 g6616 i0 53.3 1.11864406779661 45 20 57.2 1 236 102 198 241 XP_025706513.1 ectodysplasin-A receptor-associated adapter protein-like isoform X1 [Callorhinus ursinus] diamond 264 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Otariidae Callorhinus Callorhinus ursinus
28318389 28318389 PRJNA864829_S_NODE_11106_length_191_cov_1.119718_g11020_i0 PRJNA864829 11106 191 1.119718 2.13866138 Physeter macrocephalus 9755 Chordata Chordata 44.3 0.00403   NR XP_028352051.1 9755 g11020 i0 68.8 1.00523560209424 32 10 50.3 0 153 58 154 185 XP_028352051.1 uncharacterized protein [Physeter macrocephalus] diamond 192 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Physeter Physeter macrocephalus
28444884 28444884 PRJNA864829_S_NODE_5786_length_250_cov_1.343284_g5700_i0 PRJNA864829 5786 250 1.343284 3.35821 Polypterus senegalus 55291 Chordata Chordata 64.3 1.04e-9   NR XP_039598328.1 55291 g5700 i0 96.9 5.856 32 1 38.4 0 154 249 556 587 XP_039598328.1 U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Polypterus senegalus] diamond 1464 64.7 0.993817619783617 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29084443 29084443 PRJNA864829_S_NODE_10928_length_192_cov_1.860140_g10842_i0 PRJNA864829 10928 192 1.86014 3.5714688 Artiodactyla 91561 Chordata Chordata 47 6.13e-4   NR XP_033717309.1 9739 g10842 i0 59 1.28125 39 12 54.7 1 186 82 364 402 XP_033717309.1 solute carrier family 22 member 18 isoform X19 [Tursiops truncatus] diamond 246 47.4 0.991561181434599 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Tursiops Tursiops truncatus
30126226 30126226 PRJNA864829_S_NODE_9632_length_202_cov_2.810458_g9546_i0 PRJNA864829 9632 202 2.810458 5.67712516 Artiodactyla 91561 Chordata Chordata 42.7 0.0211   NR XP_028355588.2 9755 g9546 i0 40.7 5.13861386138614 54 26 80.2 2 25 186 230 277 XP_028355588.2 GATOR complex protein NPRL3-like isoform X1 [Physeter macrocephalus] diamond 1038 43.1 0.990719257540603 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Physeter Physeter macrocephalus
30253037 30253037 PRJNA864829_S_NODE_4412_length_277_cov_1.390351_g4326_i0 PRJNA864829 4412 277 1.390351 3.85127227 root 1 Root_unresolved Root_unresolved 186 5.21e-54   NR XP_030110853.2 10090 g4326 i0 98.9 15.942238267148 92 1 99.6 0 1 276 123 214 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 4416 186 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
31232109 31232109 PRJNA864829_S_NODE_10835_length_193_cov_1.048611_g10749_i0 PRJNA864829 10835 193 1.048611 2.02381923 Mammalia 40674 Chordata Chordata 75.5 2.32e-14   NR KAJ1059607.1 9925 g10749 i0 68.6 7.13471502590674 51 16 79.3 0 155 3 105 155 KAJ1059607.1 hypothetical protein K5549_020973, partial [Capra hircus] diamond 1377 75.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capra Capra hircus
31983228 31983228 PRJNA864829_S_NODE_6498_length_239_cov_2.026316_g6412_i0 PRJNA864829 6498 239 2.026316 4.84289524 Ovis ammon polii 230172 Chordata Chordata 60.8 7.01e-9   NR KAI4549249.1 230172 g6412 i0 53.6 0.702928870292887 56 26 70.3 0 236 69 34 89 KAI4549249.1 hypothetical protein MG293_001579 [Ovis ammon polii] diamond 168 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon
31983230 31983230 PRJNA864829_S_NODE_8478_length_214_cov_1.436364_g8392_i0 PRJNA864829 8478 214 1.436364 3.07381896 Canis lupus dingo 286419 Chordata Chordata 42 0.0457   NR XP_048960176.1 286419 g8392 i0 70.8 0.336448598130841 24 7 33.6 0 90 161 276 299 XP_048960176.1 methionyl-tRNA formyltransferase, mitochondrial isoform X2 [Canis lupus dingo] diamond 72 42 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
32204885 32204885 PRJNA864829_S_NODE_11378_length_189_cov_1.071429_g11292_i0 PRJNA864829 11378 189 1.071429 2.02500081 Muntiacus muntjak 9888 Chordata Chordata 43.1 0.008   NR KAB0346507.1 9888 g11292 i0 77.4 0.492063492063492 31 7 49.2 0 3 95 6 36 KAB0346507.1 hypothetical protein FD754_011364 [Muntiacus muntjak] diamond 93 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus muntjak
32710284 32710284 PRJNA864829_S_NODE_2780_length_325_cov_1.916667_g2694_i0 PRJNA864829 2780 325 1.916667 6.22916775 Rana temporaria 8407 Chordata Chordata 45.1 0.0132   NR XP_040204626.1 8407 g2694 i0 41.9 0.396923076923077 43 25 39.7 0 6 134 163 205 XP_040204626.1 uncharacterized protein LOC120936402 [Rana temporaria] diamond 129 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
32867735 32867735 PRJNA864829_S_NODE_15160_length_167_cov_1.974576_g15074_i0 PRJNA864829 15160 167 1.974576 3.29754192 Camelus bactrianus 9837 Chordata Chordata 59.3 1.03e-8   NR XP_045371645.1 9837 g15074 i0 74.4 0.70059880239521 39 10 70.1 0 16 132 193 231 XP_045371645.1 uncharacterized protein LOC123616465 [Camelus bactrianus] diamond 117 59.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Camelidae Camelus Camelus bactrianus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;