RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA864829" and tax_phylum = "Ascomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA864829 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27308168 27308168 PRJNA864829_S_NODE_10663_length_194_cov_1.489655_g10577_i0 PRJNA864829 10663 194 1.489655 2.8899307 Schizosaccharomyces pombe 4896 Fungi Fungi 75.9 6.59e-16   NR NP_588143.1 4896 g10577 i0 62.5 1.7319587628866 56 21 86.6 0 179 12 48 103 NP_588143.1 60S ribosomal protein L34 [Schizosaccharomyces pombe] diamond 336 75.9 1 Eukaryota Opisthokonta Fungi Ascomycota Schizosaccharomycetes Schizosaccharomycetales Schizosaccharomycetaceae Schizosaccharomyces Schizosaccharomyces pombe
27537253 27537253 PRJNA864829_S_NODE_15303_length_167_cov_0.889831_g15217_i0 PRJNA864829 15303 167 0.889831 1.48601777 Chaetomiaceae 35718 Fungi Fungi 65.5 6.04e-12   NR KAL1835581.1 85995 g15217 i0 55.6 2.91017964071856 54 9 97 2 6 167 52 90 KAL1835581.1 hypothetical protein VTJ49DRAFT_6440 [Mycothermus thermophilus] diamond 486 65.5 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Sordariales Chaetomiaceae Mycothermus Mycothermus thermophilus
28926406 28926406 PRJNA864829_S_NODE_14548_length_170_cov_0.876033_g14462_i0 PRJNA864829 14548 170 0.876033 1.4892561 Eukaryota 2759 Fungi Fungi 79.7 1.27e-15   NR EMG46868.1 1245528 g14462 i0 78.7 12.7411764705882 47 10 82.9 0 3 143 372 418 EMG46868.1 Polyadenylate-binding protein, cytoplasmic and nuclear [Candida maltosa Xu316] diamond 2166 80.1 0.995006242197254 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Serinales Debaryomycetaceae Candida Candida maltosa
28950119 28950119 PRJNA864829_S_NODE_6688_length_236_cov_3.096257_g6602_i0 PRJNA864829 6688 236 3.096257 7.30716652 Xylaria scruposa 743287 Fungi Fungi 46.6 3.57e-4   NR KAI1733355.1 743287 g6602 i0 69 1.19491525423729 29 9 36.9 0 234 148 15 43 KAI1733355.1 hypothetical protein F4680DRAFT_463211 [Xylaria scruposa] diamond 282 46.6 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Xylariales Xylariaceae Xylaria Xylaria scruposa
30371510 30371510 PRJNA864829_S_NODE_4092_length_284_cov_1.876596_g4006_i0 PRJNA864829 4092 284 1.876596 5.32953264 [Candida] subhashii 561895 Fungi Fungi 50.1 1.63e-4   NR XP_049261443.1 561895 g4006 i0 40 0.845070422535211 80 36 83.5 3 37 273 526 594 XP_049261443.1 uncharacterized protein J8A68_005278, partial [[Candida] subhashii] diamond 240 50.1 1 Eukaryota Opisthokonta Fungi Ascomycota Pichiomycetes Serinales Debaryomycetaceae Spathaspora [Candida] subhashii
31983231 31983231 PRJNA864829_S_NODE_8978_length_209_cov_1.168750_g8892_i0 PRJNA864829 8978 209 1.16875 2.4426875 Tothia fuscella 1048955 Fungi Fungi 40.8 0.0144   NR KAF2413444.1 1048955 g8892 i0 56.8 0.5311004784689 37 16 53.1 0 99 209 13 49 KAF2413444.1 hypothetical protein EJ08DRAFT_601403, partial [Tothia fuscella] diamond 111 40.8 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Venturiales Cylindrosympodiaceae Tothia Tothia fuscella
32109898 32109898 PRJNA864829_S_NODE_11218_length_190_cov_1.645390_g11132_i0 PRJNA864829 11218 190 1.64539 3.126241 Onygenales sp. PD_12 2135916 Fungi Fungi 51.6 1.39e-5   NR KAK2789604.1 2135916 g11132 i0 42.9 4.98947368421053 63 35 97.9 1 187 2 222 284 KAK2789604.1 heme peroxidase [Onygenales sp. PD_12] diamond 948 51.6 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Onygenales     Onygenales sp. PD_12
32561264 32561264 PRJNA864829_S_NODE_10759_length_193_cov_2.590278_g10673_i0 PRJNA864829 10759 193 2.590278 4.99923654 root 1 Root_unresolved Root_unresolved 60.1 1.49e-8   NR YP_010119226.1 36044 g10673 i0 42.6 2.82901554404145 61 35 94.8 0 192 10 620 680 YP_010119226.1 reverse transcriptase domain-containing protein, partial [Erysiphe pisi] diamond 546 60.1 1 Eukaryota Opisthokonta Fungi Ascomycota Leotiomycetes Erysiphales Erysiphaceae Erysiphe Erysiphe pisi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;