RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA864829" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA864829 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1236885 1236885 PRJNA864829_S_NODE_9561_length_203_cov_1.727273_g9475_i0 PRJNA864829 9561 203 1.727273 3.50636419 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 65.9 2.3e-11   NR KAH3766007.1 1580589 g9475 i0 56.3 1.41871921182266 48 21 70.9 0 3 146 123 170 KAH3766007.1 ubiquitinfusion protein [Pelomyxa schiedti] diamond 288 65.9 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
26897088 26897088 PRJNA864829_S_NODE_9361_length_205_cov_1.134615_g9275_i0 PRJNA864829 9361 205 1.134615 2.32596075 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 89.4 8.37e-19   NR KYQ96874.1 361077 g9275 i0 58.5 1.91707317073171 65 27 95.1 0 203 9 540 604 KYQ96874.1 glycyl-tRNA synthetase [Tieghemostelium lacteum] diamond 393 89.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
29107869 29107869 PRJNA864829_S_NODE_5408_length_256_cov_1.594203_g5322_i0 PRJNA864829 5408 256 1.594203 4.08115968 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 45.1 0.00604   NR XP_004352489.1 1257118 g5322 i0 38 1.640625 71 39 80.9 2 45 251 184 251 XP_004352489.1 uncharacterized protein ACA1_360270 [Acanthamoeba castellanii str. Neff] diamond 420 45.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;