RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA861969" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA861969 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28318373 28318373 PRJNA861969_P_NODE_1326_length_1198_cov_3.194667_g1155_i0 PRJNA861969 1326 1198 3.194667 38.27211066 Sus scrofa 9823 Chordata Chordata 801 1.07e-290   NR XP_020938199.1 9823 g1155 i0 100 1.9983305509182 399 0 99.9 0 1197 1 74 472 XP_020938199.1 ribonuclease inhibitor isoform X2 [Sus scrofa] diamond 2394 801 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
30054938 30054938 PRJNA861969_P_NODE_25551_length_273_cov_1.160000_g25320_i0 PRJNA861969 25551 273 1.16 3.1668 Engystomops pustulosus 76066 Chordata Chordata 53.1 1.22e-5   NR KAG8571490.1 76066 g25320 i0 63.9 8.30769230769231 36 13 39.6 0 108 1 982 1017 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 2268 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;