RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA861969" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA861969 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29297226 29297226 PRJNA861969_P_NODE_37869_length_244_cov_1.801170_g37638_i0 PRJNA861969 37869 244 1.80117 4.3948548 Coccomyxa viridis 1274662 Plants Plants 62 6.39e-9   NR CAL5227338.1 1274662 g37638 i0 50 1.0327868852459 84 38 98.4 1 244 5 1427 1510 CAL5227338.1 g10281 [Coccomyxa viridis] diamond 252 62 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
29486420 29486420 PRJNA861969_P_NODE_40410_length_242_cov_0.911243_g40179_i0 PRJNA861969 40410 242 0.911243 2.20520806 Coccomyxa viridis 1274662 Plants Plants 45.1 0.00571   NR CAK0787489.1 1274662 g40179 i0 38.8 0.607438016528926 49 30 60.7 0 218 72 83 131 CAK0787489.1 hypothetical protein CVIRNUC_010709 [Coccomyxa viridis] diamond 147 45.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
32300083 32300083 PRJNA861969_P_NODE_23059_length_284_cov_1.459716_g22828_i0 PRJNA861969 23059 284 1.459716 4.14559344 Coccomyxa subellipsoidea C-169 574566 Plants Plants 43.5 0.0335   NR XP_005642587.1 574566 g22828 i0 41.8 0.580985915492958 55 29 58.1 2 279 115 223 274 XP_005642587.1 hypothetical protein COCSUDRAFT_45672 [Coccomyxa subellipsoidea C-169] diamond 165 43.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;