RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA859990" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA859990 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27181356 27181356 PRJNA859990_S_NODE_11002_length_308_cov_1.204255_g10741_i0 PRJNA859990 11002 308 1.204255 3.7091054 Desulfovibrio sp. 885 Bacteria Bacteria 144 2.809999999999999e-38   NR MDR2076787.1 885 g10741 i0 67.6 2.98051948051948 102 33 99.4 0 308 3 299 400 MDR2076787.1 beta-propeller fold lactonase family protein [Desulfovibrio sp.] diamond 918 144 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
28823315 28823315 PRJNA859990_S_NODE_19008_length_248_cov_0.880000_g18747_i0 PRJNA859990 19008 248 0.88 2.1824 Smithella sp. 2053614 Bacteria Bacteria 80.1 2.77e-15   NR NLA40499.1 2053614 g18747 i0 50 2.84274193548387 78 39 94.4 0 239 6 644 721 NLA40499.1 ATP-binding protein [Smithella sp.] diamond 705 80.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp.
29171036 29171036 PRJNA859990_S_NODE_13369_length_284_cov_1.118483_g13108_i0 PRJNA859990 13369 284 1.118483 3.17649172 Desulfobacteria bacterium 3024420 Bacteria Bacteria 124 6.119999999999999e-31   NR HEX3015954.1 3024420 g13108 i0 67.7 0.982394366197183 93 30 98.2 0 6 284 111 203 HEX3015954.1 ATP-binding protein [Desulfobacteria bacterium] diamond 279 124 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria       Desulfobacteria bacterium
29707218 29707218 PRJNA859990_S_NODE_18070_length_250_cov_1.858757_g17809_i0 PRJNA859990 18070 250 1.858757 4.6468925 Desulfovibrio sp. 885 Bacteria Bacteria 151 5.05e-42   NR MCA1943739.1 885 g17809 i0 85.5 1.992 83 12 99.6 0 1 249 95 177 MCA1943739.1 type II secretion system F family protein [Desulfovibrio sp.] diamond 498 151 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;