RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA859990" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA859990 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29076342 29076342 PRJNA859990_S_NODE_18288_length_250_cov_0.870056_g18027_i0 PRJNA859990 18288 250 0.870056 2.17514 Pelagomonas calceolata 35677 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.00403   NR CAH0373016.1 35677 g18027 i0 46.3 0.648 54 28 63.6 1 205 47 96 149 CAH0373016.1 unnamed protein product [Pelagomonas calceolata] diamond 162 45.4 1 Eukaryota Sar     Pelagophyceae Pelagomonadales Pelagomonadaceae Pelagomonas Pelagomonas calceolata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;