RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA859990" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA859990 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13599607 13599607 PRJNA859990_S_NODE_20151_length_245_cov_1.244186_g19890_i0 PRJNA859990 20151 245 1.244186 3.0482557 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 142 3.02e-42   NR KAB2640464.1 2026799 g19890 i0 90.8 2.79183673469388 76 7 93.1 0 229 2 1 76 KAB2640464.1 MAG: 50S ribosomal protein L28 [Verrucomicrobiota bacterium] diamond 684 142 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28381547 28381547 PRJNA859990_S_NODE_20186_length_245_cov_1.093023_g19925_i0 PRJNA859990 20186 245 1.093023 2.67790635 Planctomycetales bacterium 2053591 Bacteria Bacteria 95.5 1.05e-20   NR MCA9123339.1 2053591 g19925 i0 60.5 0.930612244897959 76 30 93.1 0 1 228 313 388 MCA9123339.1 protein kinase [Planctomycetales bacterium] diamond 228 95.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales     Planctomycetales bacterium
29107848 29107848 PRJNA859990_S_NODE_18008_length_251_cov_0.865169_g17747_i0 PRJNA859990 18008 251 0.865169 2.17157419 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 128 5.86e-33   NR MBA3815639.1 2052176 g17747 i0 78.3 0.99203187250996006 83 18 99.2 0 249 1 206 288 MBA3815639.1 FAD-dependent oxidoreductase [Parachlamydiaceae bacterium] diamond 249 128 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
31540532 31540532 PRJNA859990_S_NODE_22156_length_241_cov_0.916667_g21895_i0 PRJNA859990 22156 241 0.916667 2.20916747 Phycisphaerae bacterium 2026778 Bacteria Bacteria 43.1 0.0263   NR MFQ5415088.1 2026778 g21895 i0 42.9 0.609958506224066 49 27 59.8 1 33 176 68 116 MFQ5415088.1 hypothetical protein [Phycisphaerae bacterium] diamond 147 43.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium
32615885 32615885 PRJNA859990_S_NODE_19940_length_246_cov_0.890173_g19679_i0 PRJNA859990 19940 246 0.890173 2.18982558 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 110 5.69e-26   NR MEY3898444.1 2026799 g19679 i0 64.2 1.97560975609756 81 29 98.8 0 244 2 766 846 MEY3898444.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 486 110 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;