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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA859990" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 7 ✖

bioproject 1

  • PRJNA859990 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26960016 26960016 PRJNA859990_S_NODE_18722_length_249_cov_0.875000_g18461_i0 PRJNA859990 18722 249 0.875 2.17875 Candidatus Shapirobacteria bacterium 2053613 Bacteria Bacteria 148 1.6099999999999996e-41   NR MDD4938351.1 2053613 g18461 i0 88.8 0.963855421686747 80 9 96.4 0 9 248 84 163 MDD4938351.1 glycosyltransferase [Candidatus Shapirobacteria bacterium] diamond 240 148 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium
27276458 27276458 PRJNA859990_S_NODE_19143_length_248_cov_0.868571_g18882_i0 PRJNA859990 19143 248 0.868571 2.15405608 Minisyncoccota bacterium 2053589 Bacteria Bacteria 57.8 6.56e-8   NR MFA6049956.1 2053589 g18882 i0 40.3 0.810483870967742 67 39 79.8 1 47 244 10 76 MFA6049956.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 201 57.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
27655566 27655566 PRJNA859990_S_NODE_20284_length_245_cov_0.895349_g20023_i0 PRJNA859990 20284 245 0.895349 2.19360505 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 137 5.08e-37   NR MDB5162429.1 2026720 g20023 i0 88.9 3.96734693877551 81 9 99.2 0 1 243 249 329 MDB5162429.1 conserved rane protein of unknown function [Candidatus Saccharibacteria bacterium] diamond 972 137 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
28886623 28886623 PRJNA859990_S_NODE_19348_length_247_cov_1.040230_g19087_i0 PRJNA859990 19348 247 1.04023 2.5693681 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 108 9.11e-27   NR MCA9318835.1 2026720 g19087 i0 61 0.995951417004049 82 32 99.6 0 1 246 39 120 MCA9318835.1 ROK family protein [Candidatus Saccharibacteria bacterium] diamond 246 108 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
32023156 32023156 PRJNA859990_S_NODE_19958_length_246_cov_0.878613_g19697_i0 PRJNA859990 19958 246 0.878613 2.16138798 Bacteria 2 Bacteria Bacteria 78.6 7.89e-17   NR PKL31604.1 2013831 g19697 i0 90.5 4.60975609756098 42 4 51.2 0 121 246 1 42 PKL31604.1 MAG: nucleoid-associated protein, YbaB/EbfC family [Candidatus Saccharibacteria bacterium HGW-Saccharibacteria-1] diamond 1134 79.3 0.991172761664565 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium HGW-Saccharibacteria-1
32521508 32521508 PRJNA859990_S_NODE_21679_length_242_cov_0.911243_g21418_i0 PRJNA859990 21679 242 0.911243 2.20520806 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 123 1.29e-30   NR MEI7539613.1 2026720 g21418 i0 77.5 0.991735537190083 80 18 99.2 0 240 1 602 681 MEI7539613.1 HAMP domain-containing sensor histidine kinase [Candidatus Saccharibacteria bacterium] diamond 240 123 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
32899103 32899103 PRJNA859990_S_NODE_21660_length_242_cov_0.911243_g21399_i0 PRJNA859990 21660 242 0.911243 2.20520806 Candidatus Dojkabacteria bacterium 2099670 Bacteria Bacteria 72 1.58e-12   NR NLD25220.1 2099670 g21399 i0 52.6 0.966942148760331 78 37 96.7 0 236 3 201 278 NLD25220.1 type II secretion system F family protein [Candidatus Dojkabacteria bacterium] diamond 234 72 1 Bacteria Bacteria candidate phyla             Candidatus Dojkabacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;