RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA857143" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA857143 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28349912 28349912 PRJNA857143_S_NODE_148326_length_268_cov_1.200000_g147233_i0 PRJNA857143 148326 268 1.2 3.216 Armatimonadota bacterium 2033014 Bacteria Bacteria 43.1 0.0357   NR MFB3880210.1 2033014 g147233 i0 34.2 0.850746268656716 76 50 85.1 0 267 40 59 134 MFB3880210.1 type IV pilus assembly protein PilM [Armatimonadota bacterium] diamond 228 43.1 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
31983182 31983182 PRJNA857143_S_NODE_47098_length_403_cov_6.839394_g46005_i0 PRJNA857143 47098 403 6.839394 27.56275782 Armatimonadota bacterium 2033014 Bacteria Bacteria 52.8 6.23e-5   NR MBM3461155.1 2033014 g46005 i0 51.1 0.714640198511166 47 23 35 0 28 168 389 435 MBM3461155.1 hypothetical protein [Armatimonadota bacterium] diamond 288 52.8 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;