RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA854078" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA854078 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29328675 29328675 PRJNA854078_P_NODE_5909_length_388_cov_6.584127_g5697_i0 PRJNA854078 5909 388 6.584127 25.54641276 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 60.8 1.31e-8   NR MBI2391685.1 2026735 g5697 i0 36.2 3.48711340206186 105 56 76.5 4 340 44 56 155 MBI2391685.1 C-type lectin domain-containing protein [Deltaproteobacteria bacterium] diamond 1353 60.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31951544 31951544 PRJNA854078_P_NODE_11557_length_277_cov_1.887255_g11345_i0 PRJNA854078 11557 277 1.887255 5.22769635 Hyalangium gracile 394092 Bacteria Bacteria 94 5.3e-20   NR WP_224248440.1 394092 g11345 i0 50.6 6.75812274368231 89 42 96.4 1 273 7 315 401 WP_224248440.1 dipeptidase [Hyalangium gracile] diamond 1872 94 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium gracile
32046601 32046601 PRJNA854078_P_NODE_1418_length_802_cov_13.735254_g1232_i0 PRJNA854078 1418 802 13.735254 110.15673708 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 65.5 4.51e-8   NR MBI3782678.1 2026735 g1232 i0 30.6 0.721945137157107 193 99 65.5 4 668 144 52 227 MBI3782678.1 trypsin-like serine protease [Deltaproteobacteria bacterium] diamond 579 65.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;