RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA853203" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA853203 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26833604 26833604 PRJNA853203_P_NODE_34321_length_249_cov_0.886364_g34172_i0 PRJNA853203 34321 249 0.886364 2.20704636 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 168 1.2499999999999996e-52   NR XP_002674291.1 5762 g34172 i0 97.5 0.963855421686747 80 2 96.4 0 241 2 1 80 XP_002674291.1 uncharacterized protein NAEGRDRAFT_56264 [Naegleria gruberi] diamond 240 168 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
29549522 29549522 PRJNA853203_P_NODE_37870_length_247_cov_0.896552_g37721_i0 PRJNA853203 37870 247 0.896552 2.21448344 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 99 6.35e-22   NR XP_002677872.1 5762 g37721 i0 59.5 0.959514170040486 79 32 96 0 245 9 907 985 XP_002677872.1 uncharacterized protein NAEGRDRAFT_48589 [Naegleria gruberi] diamond 237 99 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;