RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA853203" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA853203 · 17 ✖

analysis 1

  • diamond · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26643345 26643345 PRJNA853203_P_NODE_12921_length_282_cov_1.205742_g12772_i0 PRJNA853203 12921 282 1.205742 3.40019244 Pezoporus flaviventris 889875 Chordata Chordata 57.8 1.63e-8   NR XP_061306873.1 889875 g12772 i0 92 18.2659574468085 25 2 26.6 0 132 58 27 51 XP_061306873.1 dnaJ homolog subfamily C member 17-like [Pezoporus flaviventris] diamond 5151 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Pezoporus Pezoporus flaviventris
26896997 26896997 PRJNA853203_P_NODE_38661_length_247_cov_0.862069_g38512_i0 PRJNA853203 38661 247 0.862069 2.12931043 Molossus molossus 27622 Chordata Chordata 42 0.041   NR KAF6452817.1 27622 g38512 i0 35.5 0.923076923076923 76 48 92.3 1 5 232 79 153 KAF6452817.1 hypothetical protein HJG59_008164 [Molossus molossus] diamond 228 42 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Molossidae Molossus Molossus molossus
27181282 27181282 PRJNA853203_P_NODE_30362_length_251_cov_0.876404_g30213_i0 PRJNA853203 30362 251 0.876404 2.19977404 Monodon monoceros 40151 Chordata Chordata 43.1 0.0235   NR TKC40313.1 40151 g30213 i0 40 0.836653386454183 70 32 72.9 2 249 67 75 143 TKC40313.1 hypothetical protein EI555_003953, partial [Monodon monoceros] diamond 210 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Monodontidae Monodon Monodon monoceros
28286540 28286540 PRJNA853203_P_NODE_41046_length_245_cov_1.348837_g40897_i0 PRJNA853203 41046 245 1.348837 3.30465065 Myxine glutinosa 7769 Chordata Chordata 67.4 7.95e-11   NR XP_067965260.1 7769 g40897 i0 78.9 0.46530612244898 38 8 46.5 0 1 114 254 291 XP_067965260.1 protein FAM83B-like [Myxine glutinosa] diamond 114 67.4 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
28791756 28791756 PRJNA853203_P_NODE_16407_length_274_cov_1.378109_g16258_i0 PRJNA853203 16407 274 1.378109 3.77601866 Myxine glutinosa 7769 Chordata Chordata 73.9 5.98e-13   NR XP_067970771.1 7769 g16258 i0 72.5 2.79197080291971 51 14 55.8 0 156 4 473 523 XP_067970771.1 voltage-dependent L-type calcium channel subunit alpha-1D-like [Myxine glutinosa] diamond 765 73.9 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
29991895 29991895 PRJNA853203_P_NODE_34611_length_249_cov_0.886364_g34462_i0 PRJNA853203 34611 249 0.886364 2.20704636 Nyctereutes procyonoides 34880 Chordata Chordata 62.4 4.81e-9   NR CAD7679477.1 34880 g34462 i0 100 0.542168674698795 45 0 54.2 0 113 247 108 152 CAD7679477.1 unnamed protein product [Nyctereutes procyonoides] diamond 135 62.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
30157784 30157784 PRJNA853203_P_NODE_48472_length_240_cov_2.419162_g48323_i0 PRJNA853203 48472 240 2.419162 5.8059888 Chordata 7711 Chordata Chordata 64.7 6.47e-10   NR XP_039183841.1 88082 g48323 i0 93.9 8.275 33 2 41.3 0 101 3 115 147 XP_039183841.1 enhancer of polycomb homolog 2 isoform X1 [Crotalus tigris] diamond 1986 65.1 0.993855606758833 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus tigris
30466058 30466058 PRJNA853203_P_NODE_35553_length_248_cov_0.891429_g35404_i0 PRJNA853203 35553 248 0.891429 2.21074392 Ranitomeya imitator 111125 Chordata Chordata 43.1 0.0269   NR CAJ0943918.1 111125 g35404 i0 47.6 0.508064516129032 42 19 47.2 1 104 220 9 50 CAJ0943918.1 unnamed protein product, partial [Ranitomeya imitator] diamond 126 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
30505623 30505623 PRJNA853203_P_NODE_39933_length_246_cov_0.901734_g39784_i0 PRJNA853203 39933 246 0.901734 2.21826564 Chordata 7711 Chordata Chordata 103 1.1499999999999999e-23   NR XP_064418695.1 7897 g39784 i0 81.5 66.3414634146341 65 10 79.3 1 49 243 523 585 XP_064418695.1 hexokinase-1 isoform X2 [Latimeria chalumnae] diamond 16320 104 0.990384615384615 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
30560307 30560307 PRJNA853203_P_NODE_32653_length_250_cov_0.881356_g32504_i0 PRJNA853203 32653 250 0.881356 2.20339 Phrynocephalus forsythii 171643 Chordata Chordata 43.5 0.0208   NR KAJ7309587.1 171643 g32504 i0 40.8 0.852 71 37 85.2 2 32 244 12 77 KAJ7309587.1 hypothetical protein JRQ81_007639 [Phrynocephalus forsythii] diamond 213 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Agamidae Phrynocephalus Phrynocephalus forsythii
30631787 30631787 PRJNA853203_P_NODE_34593_length_249_cov_0.886364_g34444_i0 PRJNA853203 34593 249 0.886364 2.20704636 Passeriformes 9126 Chordata Chordata 71.6 2.56e-12   NR XP_041569966.1 59729 g34444 i0 56.9 1.28915662650602 58 25 69.9 0 11 184 84 141 XP_041569966.1 diacylglycerol O-acyltransferase 1-like [Taeniopygia guttata] diamond 321 72 0.994444444444444 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Estrildidae Taeniopygia Taeniopygia guttata
31128936 31128936 PRJNA853203_P_NODE_39315_length_246_cov_0.901734_g39166_i0 PRJNA853203 39315 246 0.901734 2.21826564 Smutsia gigantea 1559511 Chordata Chordata 43.9 0.0151   NR KAK2508851.1 1559511 g39166 i0 37.1 1.63414634146341 89 39 95.1 5 245 12 175 257 KAK2508851.1 hypothetical protein MC885_011793, partial [Smutsia gigantea] diamond 402 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Smutsia Smutsia gigantea
31327109 31327109 PRJNA853203_P_NODE_31395_length_250_cov_1.762712_g31246_i0 PRJNA853203 31395 250 1.762712 4.40678 Artiodactyla 91561 Chordata Chordata 49.7 3.3e-5   NR KAJ1061657.1 9925 g31246 i0 92 4.032 25 2 30 0 104 30 2 26 KAJ1061657.1 hypothetical protein K5549_002692 [Capra hircus] diamond 1008 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capra Capra hircus
31508908 31508908 PRJNA853203_P_NODE_30436_length_251_cov_0.876404_g30287_i0 PRJNA853203 30436 251 0.876404 2.19977404 Myxine glutinosa 7769 Chordata Chordata 63.2 2.59e-9   NR XP_067957591.1 7769 g30287 i0 66.7 0.573705179282869 48 15 56.2 1 143 3 496 543 XP_067957591.1 kinesin-like protein KIF9 [Myxine glutinosa] diamond 144 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
32268182 32268182 PRJNA853203_P_NODE_41818_length_245_cov_0.906977_g41669_i0 PRJNA853203 41818 245 0.906977 2.22209365 Crocuta crocuta 9678 Chordata Chordata 52.8 5.81e-7   NR KAF0883172.1 9678 g41669 i0 56.9 2.51020408163265 51 13 61.2 3 153 4 19 61 KAF0883172.1 LORF2 protein, partial [Crocuta crocuta] diamond 615 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
32371302 32371302 PRJNA853203_P_NODE_27919_length_252_cov_1.743017_g27770_i0 PRJNA853203 27919 252 1.743017 4.39240284 Chordata 7711 Chordata Chordata 85.9 2.72e-17   NR KYO23644.1 8496 g27770 i0 100 38.4761904761905 42 0 50 0 127 2 821 862 KYO23644.1 exportin-1 [Alligator mississippiensis] diamond 9696 85.9 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
32426259 32426259 PRJNA853203_P_NODE_11879_length_284_cov_1.616114_g11730_i0 PRJNA853203 11879 284 1.616114 4.58976376 Thamnophis sirtalis 35019 Chordata Chordata 58.5 1.76e-7   NR XP_013909607.1 35019 g11730 i0 83.3 0.380281690140845 36 6 38 0 282 175 1521 1556 XP_013909607.1 PREDICTED: probable E3 ubiquitin-protein ligase HECTD4 [Thamnophis sirtalis] diamond 108 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Colubridae Thamnophis Thamnophis sirtalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;