RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA853194" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA853194 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28823232 28823232 PRJNA853194_S_NODE_60188_length_282_cov_2.009569_g59097_i0 PRJNA853194 60188 282 2.009569 5.66698458 archaeon 1906665 Archaea Archaea 44.3 0.00607   NR HLC51431.1 1906665 g59097 i0 40.8 0.521276595744681 49 27 52.1 1 19 165 51 97 HLC51431.1 PCYCGC motif-containing (lipo)protein [archaeon] diamond 147 44.3 1 Archaea               archaeon
31983123 31983123 PRJNA853194_S_NODE_42158_length_331_cov_2.426357_g41067_i0 PRJNA853194 42158 331 2.426357 8.03124167 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 44.3 0.031   NR MBS3075847.1 2026773 g41067 i0 34.4 0.552870090634441 61 40 55.3 0 124 306 271 331 MBS3075847.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 183 44.3 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;