RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA853194" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 8 ✖

bioproject 1

  • PRJNA853194 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28823219 28823219 PRJNA853194_S_NODE_26388_length_401_cov_2.789634_g25297_i0 PRJNA853194 26388 401 2.789634 11.18643234 Micractinium conductrix 554055 Plants Plants 52 1.29e-4   NR PSC73309.1 554055 g25297 i0 31.1 0.553615960099751 74 49 53.9 1 381 166 1198 1271 PSC73309.1 cysteine ase isoform A [Micractinium conductrix] diamond 222 52 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium conductrix
29265329 29265329 PRJNA853194_S_NODE_19649_length_450_cov_14.331565_g18559_i0 PRJNA853194 19649 450 14.331565 64.4920425 Coccomyxa sp. Obi 2315456 Plants Plants 107 1.35e-24   NR BDA43847.1 2315456 g18559 i0 44.6 1.49333333333333 112 61 74.7 1 449 114 200 310 BDA43847.1 GPN-loop GTPase 1 [Coccomyxa sp. Obi] diamond 672 107 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa sp. Obi
29715487 29715487 PRJNA853194_S_NODE_58610_length_286_cov_1.051643_g57519_i0 PRJNA853194 58610 286 1.051643 3.00769898 Eukaryota 2759 Plants Plants 108 6.3e-25   NR XP_002955626.1 3068 g57519 i0 57.1 6.17832167832168 84 36 88.1 0 253 2 333 416 XP_002955626.1 uncharacterized protein VOLCADRAFT_66026, partial [Volvox carteri f. nagariensis] diamond 1767 108 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
29905421 29905421 PRJNA853194_S_NODE_591_length_1698_cov_20.197538_g411_i0 PRJNA853194 591 1698 20.197538 342.95419524 Chlorophyceae 3166 Plants Plants 144 4.29e-33   NR MEW5300207.1 2578422 g411 i0 30.7 4.37985865724382 319 210 55.7 8 1642 698 13 324 MEW5300207.1 hypothetical protein [Sanguina aurantia] diamond 7437 145 0.993103448275862 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Sanguina Sanguina aurantia
29991880 29991880 PRJNA853194_S_NODE_52191_length_301_cov_2.333333_g51100_i0 PRJNA853194 52191 301 2.333333 7.02333233 Ostreobium quekettii 121088 Plants Plants 43.5 0.0391   NR CAD7701693.1 121088 g51100 i0 33 0.877076411960133 88 53 82.7 3 285 37 97 183 CAD7701693.1 unnamed protein product [Ostreobium quekettii] diamond 264 43.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
30813244 30813244 PRJNA853194_S_NODE_13334_length_527_cov_37.621145_g12258_i0 PRJNA853194 13334 527 37.621145 198.26343415 Pleodorina starrii 330485 Plants Plants 82.8 6.35e-16   NR GLC37514.1 330485 g12258 i0 35 0.77988614800759 137 87 76.9 1 38 442 76 212 GLC37514.1 hypothetical protein PLESTM_000597400 [Pleodorina starrii] diamond 411 82.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Pleodorina Pleodorina starrii
30939837 30939837 PRJNA853194_S_NODE_11154_length_569_cov_4.754032_g10099_i0 PRJNA853194 11154 569 4.754032 27.05044208 Ostreobium quekettii 121088 Plants Plants 60.1 8.51e-7   NR CAD7705180.1 121088 g10099 i0 31.3 0.506151142355009 96 65 50.6 1 508 221 219 313 CAD7705180.1 unnamed protein product [Ostreobium quekettii] diamond 288 60.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
32434713 32434713 PRJNA853194_S_NODE_74939_length_253_cov_3.777778_g73848_i0 PRJNA853194 74939 253 3.777778 9.55777834 Chlamydomonadales 3042 Plants Plants 49.7 1.47e-4   NR GLC43887.1 330485 g73848 i0 50 1.93280632411067 44 22 52.2 0 227 96 65 108 GLC43887.1 hypothetical protein PLESTM_001530200 [Pleodorina starrii] diamond 489 49.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Pleodorina Pleodorina starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;