RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA851399" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA851399 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18690839 18690839 PRJNA851399_P_NODE_38615_length_162_cov_0.902655_g38162_i0 PRJNA851399 38615 162 0.902655 1.4623011 Labilithrix sp. 1971228 Bacteria Bacteria 108 7.840000000000001e-26   NR MBX3227831.1 1971228 g38162 i0 88.9 4.98148148148148 54 6 100 0 1 162 277 330 MBX3227831.1 GMC family oxidoreductase [Labilithrix sp.] diamond 807 108 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
27086673 27086673 PRJNA851399_P_NODE_36022_length_163_cov_0.894737_g35569_i0 PRJNA851399 36022 163 0.894737 1.45842131 Anaeromyxobacter paludicola 2918171 Bacteria Bacteria 84.3 2.53e-17   NR WP_248345100.1 2918171 g35569 i0 75.5 0.975460122699387 53 13 97.5 0 159 1 22 74 WP_248345100.1 flagellar hook-associated protein FlgK [Anaeromyxobacter paludicola] diamond 159 84.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter paludicola
30631779 30631779 PRJNA851399_P_NODE_36833_length_162_cov_1.805310_g36380_i0 PRJNA851399 36833 162 1.80531 2.9246022 Pseudomonadati 3379134 Bacteria Bacteria 92.4 3.82e-20   NR MDB4943345.1 1971228 g36380 i0 88.7 21.5555555555556 53 6 98.1 0 161 3 181 233 MDB4943345.1 Catalase [Labilithrix sp.] diamond 3492 92.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;