RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA851399" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA851399 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29139515 29139515 PRJNA851399_P_NODE_37529_length_162_cov_0.902655_g37076_i0 PRJNA851399 37529 162 0.902655 1.4623011 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.8 2.1e-4   NR XP_004335984.1 1257118 g37076 i0 53.7 0.759259259259259 41 19 75.9 0 125 3 923 963 XP_004335984.1 ubiquitin domain containing protein [Acanthamoeba castellanii str. Neff] diamond 123 47.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31382310 31382310 PRJNA851399_P_NODE_28256_length_166_cov_0.871795_g27803_i0 PRJNA851399 28256 166 0.871795 1.4471797 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 65.1 1.73e-10   NR XP_012757426.1 1410327 g27803 i0 41.8 3.92168674698795 55 32 99.4 0 166 2 214 268 XP_012757426.1 hypothetical protein SAMD00019534_026740 [Acytostelium subglobosum LB1] diamond 651 65.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;