RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

24 rows where analysis = "diamond", bioproject = "PRJNA849822" and tax_clade = "delta/epsilon subdivisions"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 24 ✖

bioproject 1

  • PRJNA849822 · 24 ✖

analysis 1

  • diamond · 24 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26810088 26810088 PRJNA849822_P_NODE_23041_length_302_cov_0.995633_g22867_i0 PRJNA849822 23041 302 0.995633 3.00681166 Bacteria 2 Bacteria Bacteria 67.4 1.69e-10   NR OGQ89419.1 1797895 g22867 i0 37.3 2.02649006622517 102 52 98.3 3 302 6 1133 1225 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 612 67.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
27031523 27031523 PRJNA849822_P_NODE_9222_length_495_cov_1.464455_g9049_i0 PRJNA849822 9222 495 1.464455 7.24905225 Bacteria 2 Bacteria Bacteria 83.2 4.88e-15   NR OGQ89419.1 1797895 g9049 i0 35 3.46666666666667 143 85 86.1 5 426 1 1110 1245 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 1716 83.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
27055048 27055048 PRJNA849822_P_NODE_42742_length_242_cov_1.467456_g42568_i0 PRJNA849822 42742 242 1.467456 3.55124352 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 2013741 Bacteria Bacteria 68.2 3.98e-11   NR PKN56436.1 2013741 g42568 i0 46.8 0.979338842975207 79 33 96.7 5 234 1 371 441 PKN56436.1 MAG: hypothetical protein CVU56_16230, partial [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 237 68.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14
27125998 27125998 PRJNA849822_P_NODE_31742_length_259_cov_2.032258_g31568_i0 PRJNA849822 31742 259 2.032258 5.26354822 Bacteria 2 Bacteria Bacteria 76.3 7.55e-14   NR OGQ89419.1 1797895 g31568 i0 47 1.92277992277992 83 38 93.8 4 5 247 1204 1282 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 498 76.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
27339549 27339549 PRJNA849822_P_NODE_25243_length_289_cov_1.296296_g25069_i0 PRJNA849822 25243 289 1.296296 3.74629544 Bradymonas sediminis 1548548 Bacteria Bacteria 83.6 2.94e-16   NR WP_133621798.1 1548548 g25069 i0 45.5 2.04498269896194 99 51 99.7 2 289 2 272 370 WP_133621798.1 hypothetical protein [Bradymonas sediminis] diamond 591 83.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis
27505783 27505783 PRJNA849822_P_NODE_2963_length_949_cov_1.711187_g2821_i0 PRJNA849822 2963 949 1.711187 16.23916463 Bacteria 2 Bacteria Bacteria 127 2.57e-28   NR OGQ89419.1 1797895 g2821 i0 33.9 1.49209694415174 236 128 69.5 6 661 2 1035 1258 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 1416 127 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
27537212 27537212 PRJNA849822_P_NODE_4743_length_726_cov_1.580398_g4579_i0 PRJNA849822 4743 726 1.580398 11.473689480000001 Bacteria 2 Bacteria Bacteria 50.8 0.00173   NR MDG2063691.1 2024889 g4579 i0 57.5 0.330578512396694 40 17 16.5 0 484 365 15 54 MDG2063691.1 molecular chaperone Tir [SAR324 cluster bacterium] diamond 240 50.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
27727035 27727035 PRJNA849822_P_NODE_14404_length_384_cov_1.652733_g14230_i0 PRJNA849822 14404 384 1.652733 6.34649472 Bacteria 2 Bacteria Bacteria 70.5 3.74e-11   NR OGQ89419.1 1797895 g14230 i0 35.1 1.78125 114 64 89.1 3 374 33 1129 1232 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 684 70.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
27821512 27821512 PRJNA849822_P_NODE_35164_length_251_cov_0.876404_g34990_i0 PRJNA849822 35164 251 0.876404 2.19977404 Bacteria 2 Bacteria Bacteria 80.5 2.17e-15   NR OGQ89419.1 1797895 g34990 i0 44.4 1.93625498007968 81 41 96.8 2 247 5 1144 1220 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 486 80.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
27876193 27876193 PRJNA849822_P_NODE_9685_length_482_cov_1.339853_g9512_i0 PRJNA849822 9685 482 1.339853 6.45809146 Bradymonadaceae bacterium 2740543 Bacteria Bacteria 46.2 0.0231   NR MFU8804266.1 2740543 g9512 i0 24 0.946058091286307 121 64 74.1 3 471 115 32 126 MFU8804266.1 DUF4397 domain-containing protein [Bradymonadaceae bacterium] diamond 456 46.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae   Bradymonadaceae bacterium
28200023 28200023 PRJNA849822_P_NODE_28606_length_273_cov_1.295000_g28432_i0 PRJNA849822 28606 273 1.295 3.53535 Bacteria 2 Bacteria Bacteria 79 1e-14   NR OGQ89419.1 1797895 g28432 i0 41.4 1.91208791208791 87 48 95.6 2 272 12 1126 1209 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 522 79 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
28579214 28579214 PRJNA849822_P_NODE_21407_length_313_cov_1.833333_g21233_i0 PRJNA849822 21407 313 1.833333 5.73833229 Bacteria 2 Bacteria Bacteria 79.3 1.22e-14   NR OGQ89419.1 1797895 g21233 i0 42.6 1.93610223642173 101 51 96.8 4 9 311 1159 1252 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 606 79.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
28831591 28831591 PRJNA849822_P_NODE_25908_length_286_cov_1.150235_g25734_i0 PRJNA849822 25908 286 1.150235 3.2896721 Myxococcota 2818505 Bacteria Bacteria 65.1 8.74e-10   NR OGQ89419.1 1797895 g25734 i0 38.2 2.64335664335664 89 49 93.4 3 9 275 1152 1234 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 756 65.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
28863142 28863142 PRJNA849822_P_NODE_16288_length_360_cov_1.087108_g16114_i0 PRJNA849822 16288 360 1.087108 3.9135888 Bacteria 2 Bacteria Bacteria 82 2.53e-15   NR OGQ89419.1 1797895 g16114 i0 45.2 1.55 93 49 77.5 2 310 32 1179 1269 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 558 82 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
29368494 29368494 PRJNA849822_P_NODE_33809_length_253_cov_0.866667_g33635_i0 PRJNA849822 33809 253 0.866667 2.19266751 Bacteria 2 Bacteria Bacteria 63.5 2.06e-9   NR OGQ89419.1 1797895 g33635 i0 43.1 1.54150197628458 65 36 77.1 1 26 220 1160 1223 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 390 63.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
29842068 29842068 PRJNA849822_P_NODE_33411_length_253_cov_0.866667_g33237_i0 PRJNA849822 33411 253 0.866667 2.19266751 Bacteria 2 Bacteria Bacteria 50.8 6.18e-5   NR OGQ89419.1 1797895 g33237 i0 42.9 1.6600790513834 70 33 80.6 2 252 49 1182 1246 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 420 50.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
29905411 29905411 PRJNA849822_P_NODE_9671_length_482_cov_2.068460_g9498_i0 PRJNA849822 9671 482 2.06846 9.9699772 Bacteria 2 Bacteria Bacteria 82.4 7.7e-15   NR OGQ89419.1 1797895 g9498 i0 35.2 1.76763485477178 142 82 85.9 6 480 67 1144 1279 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 852 82.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
29968449 29968449 PRJNA849822_P_NODE_37031_length_249_cov_0.886364_g36857_i0 PRJNA849822 37031 249 0.886364 2.20704636 Bacteria 2 Bacteria Bacteria 63.5 1.98e-9   NR OGQ89419.1 1797895 g36857 i0 45.3 1.80722891566265 75 40 90.4 1 7 231 1182 1255 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 450 63.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
30560226 30560226 PRJNA849822_P_NODE_31453_length_261_cov_0.914894_g31279_i0 PRJNA849822 31453 261 0.914894 2.38787334 Bradymonas sediminis 1548548 Bacteria Bacteria 100 5.16e-23   NR WP_111336476.1 1548548 g31279 i0 63.2 0.781609195402299 68 25 78.2 0 261 58 211 278 WP_111336476.1 acyl-CoA desaturase [Bradymonas sediminis] diamond 204 100 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis
30568439 30568439 PRJNA849822_P_NODE_19553_length_327_cov_1.657480_g19379_i0 PRJNA849822 19553 327 1.65748 5.4199596 Myxococcota 2818505 Bacteria Bacteria 81.3 3.24e-15   NR OGQ89419.1 1797895 g19379 i0 38.8 2.79816513761468 103 60 94.5 2 315 7 1171 1270 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 915 81.6 0.996323529411765 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
31232060 31232060 PRJNA849822_P_NODE_30495_length_265_cov_1.213542_g30321_i0 PRJNA849822 30495 265 1.213542 3.2158863 Bacteria 2 Bacteria Bacteria 56.6 6.39e-7   NR OGQ89419.1 1797895 g30321 i0 39.5 1.94716981132075 86 47 97.4 3 260 3 1124 1204 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 516 56.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
32213004 32213004 PRJNA849822_P_NODE_26498_length_283_cov_1.114286_g26324_i0 PRJNA849822 26498 283 1.114286 3.15342938 Bacteria 2 Bacteria Bacteria 72.8 1.72e-12   NR OGQ89419.1 1797895 g26324 i0 37.5 1.86572438162544 88 51 93.3 2 277 14 1140 1223 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 528 72.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15
32521360 32521360 PRJNA849822_P_NODE_4479_length_752_cov_2.374080_g4315_i0 PRJNA849822 4479 752 2.37408 17.8530816 Bradymonadales bacterium 2099667 Bacteria Bacteria 107 3.09e-22   NR MBS7380160.1 2099667 g4315 i0 46.6 0.530585106382979 133 61 51.5 5 1 387 300 426 MBS7380160.1 DUF4215 domain-containing protein [Bradymonadales bacterium] diamond 399 107 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales     Bradymonadales bacterium
32686816 32686816 PRJNA849822_P_NODE_32280_length_257_cov_2.108696_g32106_i0 PRJNA849822 32280 257 2.108696 5.41934872 Bacteria 2 Bacteria Bacteria 68.9 2.71e-11   NR OGQ89419.1 1797895 g32106 i0 40.7 1.89105058365759 81 44 94.6 2 247 5 1158 1234 OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] diamond 486 68.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;