RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA849646" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849646 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
838356 838356 PRJNA849646_P_NODE_40541_length_233_cov_2.593750_g40423_i0 PRJNA849646 40541 233 2.59375 6.0434375 Planorbidae 6524 Mollusca Mollusca 159 4.48e-48   NR XP_013081219.1 6526 g40423 i0 97.4 3.9656652360515 77 2 99.1 0 2 232 43 119 XP_013081219.1 myosin essential light chain, striated adductor muscle-like [Biomphalaria glabrata] diamond 924 159 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
30402909 30402909 PRJNA849646_P_NODE_8213_length_292_cov_1.949772_g8095_i0 PRJNA849646 8213 292 1.949772 5.69333424 Mytilus galloprovincialis 29158 Mollusca Mollusca 47.8 7.94e-4   NR VDI14154.1 29158 g8095 i0 45.3 0.544520547945205 53 29 54.5 0 95 253 154 206 VDI14154.1 Hypothetical predicted protein [Mytilus galloprovincialis] diamond 159 47.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus galloprovincialis
30686664 30686664 PRJNA849646_P_NODE_20733_length_267_cov_1.587629_g20615_i0 PRJNA849646 20733 267 1.587629 4.23896943 Pomacea canaliculata 400727 Mollusca Mollusca 48.5 4.2e-4   NR PVD27028.1 400727 g20615 i0 82.8 0.325842696629214 29 5 32.6 0 97 11 261 289 PVD27028.1 hypothetical protein C0Q70_12178 [Pomacea canaliculata] diamond 87 48.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Architaenioglossa Ampullariidae Pomacea Pomacea canaliculata
31801385 31801385 PRJNA849646_P_NODE_22877_length_263_cov_1.547368_g22759_i0 PRJNA849646 22877 263 1.547368 4.06957784 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 67.4 4.83e-11   NR XP_025082818.1 400727 g22759 i0 72.1 6 43 12 49 0 4 132 203 245 XP_025082818.1 triosephosphate isomerase-like [Pomacea canaliculata] diamond 1578 67.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Architaenioglossa Ampullariidae Pomacea Pomacea canaliculata
32710071 32710071 PRJNA849646_P_NODE_24500_length_260_cov_1.636364_g24382_i0 PRJNA849646 24500 260 1.636364 4.2545464 Crassostrea virginica 6565 Mollusca Mollusca 135 1.1699999999999999e-34   NR XP_022314514.1 6565 g24382 i0 73.3 6.86538461538461 86 23 99.2 0 259 2 1257 1342 XP_022314514.1 intron-binding protein aquarius-like isoform X1 [Crassostrea virginica] diamond 1785 135 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Crassostrea Crassostrea virginica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;