RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA849646" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849646 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22514929 22514929 PRJNA849646_P_NODE_2158_length_373_cov_2.383333_g2040_i0 PRJNA849646 2158 373 2.383333 8.88983209 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 146 3.93e-41   NR AAH61437.1 8364 g2040 i0 79.2 6.82037533512064 106 22 85.3 0 3 320 137 242 AAH61437.1 40S ribosomal protein S6 [Xenopus tropicalis] diamond 2544 147 0.993197278911565 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
30244588 30244588 PRJNA849646_P_NODE_1452_length_429_cov_2.452247_g1335_i0 PRJNA849646 1452 429 2.452247 10.52013963 Mus musculus 10090 Chordata Chordata 290 4.4099999999999997e-94   NR NP_001165572.1 10090 g1335 i0 100 0.993006993006993 142 0 99.3 0 427 2 82 223 NP_001165572.1 ribonuclease inhibitor isoform b [Mus musculus] diamond 426 290 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
30465930 30465930 PRJNA849646_P_NODE_20393_length_267_cov_4.262887_g20275_i0 PRJNA849646 20393 267 4.262887 11.38190829 Equus asinus 9793 Chordata Chordata 44.7 0.00877   NR XP_044612074.1 9793 g20275 i0 69.2 0.921348314606742 26 8 29.2 0 106 183 204 229 XP_044612074.1 C-type lectin domain family 7 member A isoform X3 [Equus asinus] diamond 246 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus asinus
30465938 30465938 PRJNA849646_P_NODE_41213_length_230_cov_2.668790_g41095_i0 PRJNA849646 41213 230 2.66879 6.138217 Ranitomeya imitator 111125 Chordata Chordata 44.7 0.00671   NR CAJ0964628.1 111125 g41095 i0 51.1 2.03478260869565 45 18 53.5 1 80 202 920 964 CAJ0964628.1 unnamed protein product [Ranitomeya imitator] diamond 468 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
32552941 32552941 PRJNA849646_P_NODE_5619_length_310_cov_2.890295_g5501_i0 PRJNA849646 5619 310 2.890295 8.9599145 Sorex fumeus 62283 Chordata Chordata 45.1 0.0112   NR XP_055971594.1 62283 g5501 i0 45.3 2.41935483870968 53 29 51.3 0 235 77 227 279 XP_055971594.1 syntaxin-2 [Sorex fumeus] diamond 750 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Sorex Sorex fumeus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;