RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA849646" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA849646 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26737935 26737935 PRJNA849646_P_NODE_19541_length_269_cov_2.163265_g19423_i0 PRJNA849646 19541 269 2.163265 5.81918285 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 48.5 4.74e-4   NR XP_011129914.1 110365 g19423 i0 39 0.91449814126394 82 45 91.4 2 248 3 390 466 XP_011129914.1 putative pentatricopeptide repeat protein [Gregarina niphandrodes] diamond 246 48.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
27276247 27276247 PRJNA849646_P_NODE_15463_length_277_cov_1.509804_g15345_i0 PRJNA849646 15463 277 1.509804 4.18215708 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 101 1.39e-22   NR XP_011132332.1 110365 g15345 i0 80.6 0.671480144404332 62 12 67.1 0 190 5 482 543 XP_011132332.1 major facilitator superfamily transporter [Gregarina niphandrodes] diamond 186 101 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
30402904 30402904 PRJNA849646_P_NODE_33593_length_246_cov_2.352601_g33475_i0 PRJNA849646 33593 246 2.352601 5.78739846 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 64.3 9.84e-10   NR XP_011130027.1 110365 g33475 i0 73.8 0.51219512195122 42 11 51.2 0 245 120 2877 2918 XP_011130027.1 hypothetical protein GNI_063170 [Gregarina niphandrodes] diamond 126 64.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;