RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA849646" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA849646 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15261311 15261311 PRJNA849646_P_NODE_3112_length_328_cov_1.094118_g2994_i0 PRJNA849646 3112 328 1.094118 3.58870704 Orthomarburgvirus 3044783 Viruses Viruses 201 2.73e-57   NR ABE27095.1 378831 g2994 i0 97.1 3.73170731707317 102 3 93.3 0 328 23 1216 1317 ABE27095.1 polymerase [Lake Victoria marburgvirus - DRC1999] diamond 1224 201 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Filoviridae Orthomarburgvirus Orthomarburgvirus marburgense
26674721 26674721 PRJNA849646_P_NODE_2301_length_364_cov_3.594502_g2183_i0 PRJNA849646 2301 364 3.594502 13.08398728 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 206 7.630000000000001e-59   NR WKU61618.1 3063761 g2183 i0 85.8 0.989010989010989 120 17 98.9 0 3 362 1219 1338 WKU61618.1 polyprotein [Zebrafish picornavirus 2] diamond 360 206 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
26706433 26706433 PRJNA849646_P_NODE_28261_length_252_cov_3.553073_g28143_i0 PRJNA849646 28261 252 3.553073 8.95374396 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 81.6 8.52e-16   NR AVM87439.1 3063761 g28143 i0 52.9 0.833333333333333 70 33 83.3 0 3 212 975 1044 AVM87439.1 polyprotein [Wuhan sharpbelly picornavirus 1] diamond 210 81.6 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Danio blood picornavirus/Zebrafish picornavirus 2

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;