RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA849172" and tax_phylum = "Vulcanimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA849172 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27465844 27465844 PRJNA849172_P_NODE_71963_length_267_cov_4.948454_g71603_i0 PRJNA849172 71963 267 4.948454 13.21237218 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 57.4 3.49e-7   NR MFN8614227.1 3107663 g71603 i0 53.8 0.584269662921348 52 24 58.4 0 161 6 301 352 MFN8614227.1 tetratricopeptide repeat protein [Vulcanimicrobiota bacterium] diamond 156 57.4 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
28160443 28160443 PRJNA849172_P_NODE_123985_length_228_cov_7.058065_g123625_i0 PRJNA849172 123985 228 7.058065 16.0923882 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 103 8.03e-25   NR MFN8606770.1 3107663 g123625 i0 68.5 0.960526315789474 73 23 96.1 0 9 227 30 102 MFN8606770.1 PHB depolymerase family esterase [Vulcanimicrobiota bacterium] diamond 219 103 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
32426091 32426091 PRJNA849172_P_NODE_42379_length_318_cov_5.265306_g42019_i0 PRJNA849172 42379 318 5.265306 16.74367308 Candidatus Baltobacteraceae bacterium 3107660 Bacteria Bacteria 72.8 7.25e-13   NR HVA29409.1 2952909 g42019 i0 54.5 0.518867924528302 55 25 51.9 0 141 305 12 66 HVA29409.1 hypothetical protein [Candidatus Baltobacteraceae bacterium] diamond 165 72.8 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae   Candidatus Baltobacteraceae bacterium
32521175 32521175 PRJNA849172_P_NODE_100879_length_246_cov_0.895954_g100519_i0 PRJNA849172 100879 246 0.895954 2.20404684 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 65.1 1.15e-10   NR MFA5507828.1 3107663 g100519 i0 70.5 1.4390243902439 44 12 52.4 1 242 114 15 58 MFA5507828.1 tyrosine-type recombinase/integrase [Vulcanimicrobiota bacterium] diamond 354 65.1 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;