RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA849172" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA849172 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27086471 27086471 PRJNA849172_P_NODE_103022_length_244_cov_7.760234_g102662_i0 PRJNA849172 103022 244 7.760234 18.93497096 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 64.3 9.58e-10   NR MCK9234823.1 1898209 g102662 i0 43.2 0.995901639344262 81 45 98.4 1 244 5 753 833 MCK9234823.1 hypothetical protein [Acholeplasmataceae bacterium] diamond 243 64.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
27307871 27307871 PRJNA849172_P_NODE_129703_length_222_cov_4.174497_g129343_i0 PRJNA849172 129703 222 4.174497 9.26738334 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 42.7 0.0278   NR MCK9234865.1 1898209 g129343 i0 39.3 0.756756756756757 56 34 75.7 0 220 53 353 408 MCK9234865.1 HNH endonuclease [Acholeplasmataceae bacterium] diamond 168 42.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
29738745 29738745 PRJNA849172_P_NODE_84890_length_255_cov_3.478022_g84530_i0 PRJNA849172 84890 255 3.478022 8.8689561 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 53.1 9.3e-6   NR MCK9234969.1 1898209 g84530 i0 41.9 0.729411764705882 62 35 71.8 1 242 60 909 970 MCK9234969.1 hypothetical protein [Acholeplasmataceae bacterium] diamond 186 53.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
30434305 30434305 PRJNA849172_P_NODE_114573_length_236_cov_5.472393_g114213_i0 PRJNA849172 114573 236 5.472393 12.91484748 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 44.3 0.00979   NR MCK9234802.1 1898209 g114213 i0 55 0.508474576271186 40 16 50.8 1 117 236 8 45 MCK9234802.1 tail fiber domain-containing protein [Acholeplasmataceae bacterium] diamond 120 44.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
32584293 32584293 PRJNA849172_P_NODE_127219_length_226_cov_4.647059_g126859_i0 PRJNA849172 127219 226 4.647059 10.50235334 Acholeplasma sp. 33015 Bacteria Bacteria 71.6 1.93e-12   NR HEY8405251.1 33015 g126859 i0 46.3 1.06194690265487 80 36 96.9 1 6 224 490 569 HEY8405251.1 hypothetical protein [Acholeplasma sp.] diamond 240 71.6 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma sp.
32584343 32584343 PRJNA849172_P_NODE_53819_length_289_cov_2.856481_g53459_i0 PRJNA849172 53819 289 2.856481 8.25523009 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 59.7 6.59e-8   NR MCK9234922.1 1898209 g53459 i0 66.2 0.768166089965398 74 25 76.8 0 8 229 145 218 MCK9234922.1 hypothetical protein [Acholeplasmataceae bacterium] diamond 222 59.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;