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contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA849172" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 19 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA849172 · 19 ✖

analysis 1

  • diamond · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3784159 3784159 PRJNA849172_P_NODE_18003_length_488_cov_22.392771_g17644_i0 PRJNA849172 18003 488 22.392771 109.27672248 Mammalia 40674 Chordata Chordata 106 1.6600000000000002e-26   NR XP_036624378.1 9337 g17644 i0 59.7 4.78893442622951 77 31 47.3 0 377 147 32 108 XP_036624378.1 cytochrome c oxidase subunit 6A1, mitochondrial [Trichosurus vulpecula] diamond 2337 107 0.990654205607477 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phalangeridae Trichosurus Trichosurus vulpecula
9762124 9762124 PRJNA849172_P_NODE_101028_length_245_cov_11.500000_g100668_i0 PRJNA849172 101028 245 11.5 28.175 root 1 Root_unresolved Root_unresolved 99.8 6.6e-24   NR XP_035660024.1 7739 g100668 i0 67.2 3.26938775510204 67 22 82 0 1 201 144 210 XP_035660024.1 60S ribosomal protein L11 isoform X1 [Branchiostoma floridae] diamond 801 100 0.998 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
19084516 19084516 PRJNA849172_P_NODE_81135_length_258_cov_8.854054_g80775_i0 PRJNA849172 81135 258 8.854054 22.84345932 root 1 Root_unresolved Root_unresolved 122 4.89e-31   NR CAB3219666.1 59560 g80775 i0 77 8.53488372093023 74 17 86 0 3 224 323 396 CAB3219666.1 3-ketoacyl-CoA thiolase, mitochondrial-like [Phallusia mammillata] diamond 2202 123 0.991869918699187 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
26928282 26928282 PRJNA849172_P_NODE_18882_length_476_cov_12.059553_g18523_i0 PRJNA849172 18882 476 12.059553 57.40347228 Branchiostoma lanceolatum 7740 Chordata Chordata 99 2.98e-22   NR CAH1266045.1 7740 g18523 i0 34.7 1.8781512605042 147 90 92 4 466 29 81 222 CAH1266045.1 GM2A [Branchiostoma lanceolatum] diamond 894 99 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
26999721 26999721 PRJNA849172_P_NODE_34762_length_348_cov_41.621818_g34403_i0 PRJNA849172 34762 348 41.621818 144.84392664 Metazoa 33208 Chordata Chordata 107 2.23e-26   NR XP_040592635.1 10036 g34403 i0 57.4 7.47413793103448 94 38 81 1 346 65 92 183 XP_040592635.1 ras-related protein Rab-2B isoform X2 [Mesocricetus auratus] diamond 2601 107 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Mesocricetus Mesocricetus auratus
27474035 27474035 PRJNA849172_P_NODE_73483_length_266_cov_1.891192_g73123_i0 PRJNA849172 73483 266 1.891192 5.03057072 root 1 Root_unresolved Root_unresolved 42.7 0.0414   NR CAL5923357.1 7748 g73123 i0 43.1 1.38721804511278 65 35 73.3 1 223 29 122 184 CAL5923357.1 unnamed protein product [Lampetra fluviatilis] diamond 369 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
27663583 27663583 PRJNA849172_P_NODE_44984_length_310_cov_33.333333_g44624_i0 PRJNA849172 44984 310 33.333333 103.3333323 Chordata 7711 Chordata Chordata 90.5 2.33e-21   NR XP_043942800.1 7888 g44624 i0 100 65.4677419354839 44 0 42.6 0 310 179 39 82 XP_043942800.1 60S ribosomal protein L39-like [Protopterus annectens] diamond 20295 90.5 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
27695293 27695293 PRJNA849172_P_NODE_57924_length_283_cov_15.690476_g57564_i0 PRJNA849172 57924 283 15.690476 44.40404708 Chordata 7711 Chordata Chordata 69.3 1.84e-12   NR XP_053239864.1 65483 g57564 i0 63.2 8.88339222614841 87 30 92.2 1 269 9 65 149 XP_053239864.1 coiled-coil domain-containing protein 25 isoform X2 [Podarcis raffonei] diamond 2514 69.7 0.994261119081779 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Podarcis Podarcis raffonei
27876094 27876094 PRJNA849172_P_NODE_9445_length_702_cov_21.821940_g9097_i0 PRJNA849172 9445 702 21.82194 153.1900188 Engystomops pustulosus 76066 Chordata Chordata 180 1.7e-51   NR KAG8587977.1 76066 g9097 i0 49.5 8.36324786324786 196 75 82.9 5 700 119 98 271 KAG8587977.1 hypothetical protein GDO81_005837 [Engystomops pustulosus] diamond 5871 180 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
28034108 28034108 PRJNA849172_P_NODE_143665_length_203_cov_6.984615_g143305_i0 PRJNA849172 143665 203 6.984615 14.17876845 Haliaeetus leucocephalus 52644 Chordata Chordata 42 0.0402   NR XP_010563483.1 52644 g143305 i0 46.3 0.605911330049261 41 22 60.6 0 130 8 67 107 XP_010563483.1 PREDICTED: coenzyme Q-binding protein COQ10 homolog A, mitochondrial [Haliaeetus leucocephalus] diamond 123 42 1 Eukaryota Opisthokonta Metazoa Chordata Aves Accipitriformes Accipitridae Haliaeetus Haliaeetus leucocephalus
28476011 28476011 PRJNA849172_P_NODE_116026_length_235_cov_3.759259_g115666_i0 PRJNA849172 116026 235 3.759259 8.83425865 Dendropsophus ebraccatus 150705 Chordata Chordata 102 4.189999999999999e-23   NR XP_069811917.1 150705 g115666 i0 63.5 2.83404255319149 74 27 94.5 0 12 233 221 294 XP_069811917.1 general transcription factor II-I repeat domain-containing protein 2-like [Dendropsophus ebraccatus] diamond 666 102 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Dendropsophus Dendropsophus ebraccatus
28570691 28570691 PRJNA849172_P_NODE_86267_length_254_cov_2.585635_g85907_i0 PRJNA849172 86267 254 2.585635 6.5675129 Ursus arctos 9644 Chordata Chordata 44.3 0.0119   NR XP_057162024.1 9644 g85907 i0 37.5 1.03937007874016 88 41 93.3 3 15 251 272 354 XP_057162024.1 uncharacterized protein LOC113266848 [Ursus arctos] diamond 264 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ursus Ursus arctos
29170762 29170762 PRJNA849172_P_NODE_146649_length_200_cov_5.763780_g146289_i0 PRJNA849172 146649 200 5.76378 11.52756 Dipodomys ordii 10020 Chordata Chordata 42.7 0.0217   NR XP_012881624.1 10020 g146289 i0 45.5 0.945 33 18 49.5 0 173 75 469 501 XP_012881624.1 PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Dipodomys ordii] diamond 189 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Heteromyidae Dipodomys Dipodomys ordii
29265123 29265123 PRJNA849172_P_NODE_108109_length_242_cov_1.846154_g107749_i0 PRJNA849172 108109 242 1.846154 4.46769268 Branchiostoma lanceolatum 7740 Chordata Chordata 122 3.0999999999999996e-32   NR CAH1240681.1 7740 g107749 i0 76.4 0.892561983471074 72 17 89.3 0 216 1 18 89 CAH1240681.1 MTOR [Branchiostoma lanceolatum] diamond 216 122 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
30916431 30916431 PRJNA849172_P_NODE_140774_length_206_cov_15.127820_g140414_i0 PRJNA849172 140774 206 15.12782 31.1633092 Opisthokonta 33154 Chordata Chordata 75.5 2.22e-14   NR XP_002125322.1 7719 g140414 i0 59.4 6.94660194174757 64 20 84.5 1 204 31 187 250 XP_002125322.1 40S ribosomal protein S3a [Ciona intestinalis] diamond 1431 75.9 0.994729907773386 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
31010985 31010985 PRJNA849172_P_NODE_33934_length_352_cov_15.810036_g33575_i0 PRJNA849172 33934 352 15.810036 55.65132672 Metazoa 33208 Chordata Chordata 105 6.29e-25   NR XP_009860378.1 7719 g33575 i0 61 4.06534090909091 82 31 69 1 82 324 175 256 XP_009860378.1 40S ribosomal protein S4-like isoform X2 [Ciona intestinalis] diamond 1431 105 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
31856426 31856426 PRJNA849172_P_NODE_48457_length_300_cov_18.784141_g48097_i0 PRJNA849172 48457 300 18.784141 56.352423 Rhinatrema bivittatum 194408 Chordata Chordata 148 6.859999999999998e-42   NR XP_029447335.1 194408 g48097 i0 74.7 2.73 91 23 91 0 300 28 177 267 XP_029447335.1 60S ribosomal protein L7 [Rhinatrema bivittatum] diamond 819 148 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Rhinatrematidae Rhinatrema Rhinatrema bivittatum
32267932 32267932 PRJNA849172_P_NODE_107118_length_242_cov_5.715976_g106758_i0 PRJNA849172 107118 242 5.715976 13.83266192 Heptranchias perlo 212740 Chordata Chordata 87.4 6.86e-18   NR XP_067839112.1 212740 g106758 i0 63.2 2.52892561983471 68 24 83.1 1 237 37 670 737 XP_067839112.1 peroxisomal multifunctional enzyme type 2 [Heptranchias perlo] diamond 612 87.4 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Hexanchiformes Hexanchidae Heptranchias Heptranchias perlo
32678344 32678344 PRJNA849172_P_NODE_54000_length_289_cov_1.925926_g53640_i0 PRJNA849172 54000 289 1.925926 5.56592614 Chelonia mydas 8469 Chordata Chordata 62.4 7.73e-9   NR EMP29380.1 8469 g53640 i0 74.4 2.08650519031142 39 10 40.5 0 75 191 395 433 EMP29380.1 Signal transducer and activator of transcription 6 [Chelonia mydas] diamond 603 62.4 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Chelonia Chelonia mydas

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;