RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA846486" and tax_phylum = "Deinococcota"

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tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA846486 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22510179 22510179 PRJNA846486_P_NODE_83718_length_166_cov_0.888889_g83622_i0 PRJNA846486 83718 166 0.888889 1.47555574 Thermaceae 188786 Bacteria Bacteria 86.3 3.51e-18   NR WP_013702860.1 186192 g83622 i0 79.6 2.92771084337349 54 11 97.6 0 3 164 222 275 WP_013702860.1 acyl-CoA dehydrogenase family protein [Marinithermus hydrothermalis] diamond 486 86.7 0.995386389850058 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Marinithermus Marinithermus hydrothermalis
26674582 26674582 PRJNA846486_P_NODE_89141_length_164_cov_0.904348_g89045_i0 PRJNA846486 89141 164 0.904348 1.48313072 Deinococcus sp. 47478 Bacteria Bacteria 41.6 0.0334   NR WP_293913725.1 47478 g89045 i0 42.9 0.640243902439024 35 20 64 0 107 3 157 191 WP_293913725.1 LAGLIDADG family homing endonuclease [Deinococcus sp.] diamond 105 41.6 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
26769938 26769938 PRJNA846486_P_NODE_88841_length_164_cov_0.904348_g88745_i0 PRJNA846486 88841 164 0.904348 1.48313072 Deinococcus sp. 47478 Bacteria Bacteria 66.2 5.76e-11   NR WP_310582088.1 47478 g88745 i0 65.2 0.841463414634146 46 16 84.1 0 156 19 308 353 WP_310582088.1 hypothetical protein [Deinococcus sp.] diamond 138 66.2 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
26841888 26841888 PRJNA846486_P_NODE_81761_length_167_cov_0.881356_g81665_i0 PRJNA846486 81761 167 0.881356 1.47186452 Bacteria 2 Bacteria Bacteria 44.7 0.00281   NR MER3554936.1 1955249 g81665 i0 55.3 2.7125748502994 38 10 68.3 1 166 53 243 273 MER3554936.1 DNA polymerase [Meiothermus sp.] diamond 453 45.1 0.991130820399113 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus sp.
27915853 27915853 PRJNA846486_P_NODE_92505_length_162_cov_1.477876_g92409_i0 PRJNA846486 92505 162 1.477876 2.39415912 Bacteria 2 Bacteria Bacteria 42 0.0231   NR MEY4531314.1 1913990 g92409 i0 45 2.53703703703704 40 22 74.1 0 17 136 221 260 MEY4531314.1 hypothetical protein [Deinococcota bacterium] diamond 411 42.4 0.990566037735849 Bacteria   Thermotogati Deinococcota         Deinococcota bacterium
29391703 29391703 PRJNA846486_P_NODE_36469_length_223_cov_2.390805_g36373_i0 PRJNA846486 36469 223 2.390805 5.33149515 Trueperaceae bacterium 2026798 Bacteria Bacteria 94.7 1.38e-20   NR MDZ7703619.1 2026798 g36373 i0 64.3 0.94170403587444 70 25 94.2 0 222 13 205 274 MDZ7703619.1 MBL fold metallo-hydrolase [Trueperaceae bacterium] diamond 210 94.7 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;