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contig_metadata

18 rows where analysis = "diamond", bioproject = "PRJNA846486" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA846486 · 18 ✖

analysis 1

  • diamond · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26643092 26643092 PRJNA846486_P_NODE_88361_length_164_cov_0.904348_g88265_i0 PRJNA846486 88361 164 0.904348 1.48313072 Malaclemys terrapin pileata 2991368 Chordata Chordata 52.8 3.2e-6   NR XP_053886307.1 2991368 g88265 i0 46 0.914634146341463 50 27 91.5 0 14 163 107 156 XP_053886307.1 uncharacterized protein LOC128838280 [Malaclemys terrapin pileata] diamond 150 52.8 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Emydidae Malaclemys Malaclemys terrapin
26936537 26936537 PRJNA846486_P_NODE_73802_length_171_cov_1.204918_g73706_i0 PRJNA846486 73802 171 1.204918 2.06040978 Metazoa 33208 Chordata Chordata 104 1.68e-24   NR XP_044151372.1 30331 g73706 i0 92.9 14.7017543859649 56 4 98.2 0 2 169 338 393 XP_044151372.1 protein ZBED8-like [Bufo gargarizans] diamond 2514 105 0.990476190476191 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufo Bufo gargarizans
27023122 27023122 PRJNA846486_P_NODE_42202_length_211_cov_1.333333_g42106_i0 PRJNA846486 42202 211 1.333333 2.81333263 Chrysochloris asiatica 185453 Chordata Chordata 47.4 5.8e-4   NR XP_006871840.1 185453 g42106 i0 42.6 1.4218009478673 54 28 76.8 1 11 172 55 105 XP_006871840.1 PREDICTED: MORN repeat-containing protein 1 [Chrysochloris asiatica] diamond 300 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia   Chrysochloridae Chrysochloris Chrysochloris asiatica
27054857 27054857 PRJNA846486_P_NODE_35922_length_225_cov_1.085227_g35826_i0 PRJNA846486 35922 225 1.085227 2.44176075 Callorhinchus milii 7868 Chordata Chordata 150 1.18e-40   NR XP_042202422.1 7868 g35826 i0 97.3 5.92 74 2 98.7 0 3 224 515 588 XP_042202422.1 uncharacterized protein LOC121852521 [Callorhinchus milii] diamond 1332 150 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
28097029 28097029 PRJNA846486_P_NODE_94165_length_162_cov_0.920354_g94069_i0 PRJNA846486 94165 162 0.920354 1.49097348 Crocuta crocuta 9678 Chordata Chordata 40.8 0.0255   NR KAF0878112.1 9678 g94069 i0 44.1 0.62962962962963 34 19 63 0 22 123 72 105 KAF0878112.1 LORF2 protein, partial [Crocuta crocuta] diamond 102 40.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
28949782 28949782 PRJNA846486_P_NODE_77128_length_169_cov_0.866667_g77032_i0 PRJNA846486 77128 169 0.866667 1.46466723 Rana temporaria 8407 Chordata Chordata 74.3 1e-13   NR XP_040217006.1 8407 g77032 i0 71.4 16.1005917159763 49 14 87 0 148 2 3 51 XP_040217006.1 general transcription factor II-I repeat domain-containing protein 2B-like [Rana temporaria] diamond 2721 74.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
29612250 29612250 PRJNA846486_P_NODE_11230_length_370_cov_2.950156_g11135_i0 PRJNA846486 11230 370 2.950156 10.9155772 Erpetoichthys calabaricus 27687 Chordata Chordata 130 5.6e-34   NR XP_051791274.1 27687 g11135 i0 76.7 6.63243243243243 90 20 72.2 1 33 299 115 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 2454 130 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
30054600 30054600 PRJNA846486_P_NODE_89351_length_164_cov_0.878261_g89255_i0 PRJNA846486 89351 164 0.878261 1.44034804 Polypterus senegalus 55291 Chordata Chordata 43.9 0.00462   NR XP_039600437.1 55291 g89255 i0 70.4 0.49390243902439 27 8 49.4 0 141 61 20 46 XP_039600437.1 protein FAM3B-like isoform X2 [Polypterus senegalus] diamond 81 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
30094607 30094607 PRJNA846486_P_NODE_30032_length_241_cov_1.625000_g29936_i0 PRJNA846486 30032 241 1.625 3.91625 Metazoa 33208 Chordata Chordata 85.1 2.7e-17   NR XP_035679889.1 7739 g29936 i0 52.5 3.95850622406639 80 36 97.1 1 8 241 254 333 XP_035679889.1 cysteine proteinase 1-like [Branchiostoma floridae] diamond 954 85.9 0.990686845168801 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
30189490 30189490 PRJNA846486_P_NODE_83572_length_166_cov_0.888889_g83476_i0 PRJNA846486 83572 166 0.888889 1.47555574 Chordata 7711 Chordata Chordata 62.8 1.12e-9   NR XP_006007181.1 7897 g83476 i0 100 144 24 0 43.4 0 166 95 293 316 XP_006007181.1 protein-lysine 6-oxidase [Latimeria chalumnae] diamond 23904 62.8 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
30979606 30979606 PRJNA846486_P_NODE_82234_length_167_cov_0.864407_g82138_i0 PRJNA846486 82234 167 0.864407 1.44355969 Chordata 7711 Chordata Chordata 58.2 4.78e-8   NR MEE6512861.1 8439 g82138 i0 100 11.6407185628743 27 0 48.5 0 167 87 160 186 MEE6512861.1 hypothetical protein [Ascaphus truei] diamond 1944 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
31137104 31137104 PRJNA846486_P_NODE_56975_length_189_cov_0.871429_g56879_i0 PRJNA846486 56975 189 0.871429 1.64700081 Chordata 7711 Chordata Chordata 58.5 4.73e-8   NR KAE8579759.1 8364 g56879 i0 59.1 34.2222222222222 44 18 69.8 0 53 184 65 108 KAE8579759.1 hypothetical protein XENTR_v10024172 [Xenopus tropicalis] diamond 6468 58.9 0.99320882852292 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
32086295 32086295 PRJNA846486_P_NODE_34338_length_229_cov_1.094444_g34242_i0 PRJNA846486 34338 229 1.094444 2.50627676 Bufo 8383 Chordata Chordata 146 1.8799999999999993e-40   NR XP_040283232.1 8384 g34242 i0 98.7 11.7903930131004 75 1 98.3 0 227 3 136 210 XP_040283232.1 protein ZBED8-like [Bufo bufo] diamond 2700 146 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufo Bufo bufo
32244827 32244827 PRJNA846486_P_NODE_77158_length_169_cov_0.866667_g77062_i0 PRJNA846486 77158 169 0.866667 1.46466723 Chordata 7711 Chordata Chordata 59.3 1.99e-8   NR XP_038647155.1 7830 g77062 i0 100 111.355029585799 29 0 51.5 0 169 83 472 500 XP_038647155.1 protein furry homolog-like isoform X15 [Scyliorhinus canicula] diamond 18819 59.7 0.993299832495812 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
32521151 32521151 PRJNA846486_P_NODE_51059_length_196_cov_1.972789_g50963_i0 PRJNA846486 51059 196 1.972789 3.86666644 Ascaphus truei 8439 Chordata Chordata 47 6.61e-4   NR MEE6482045.1 8439 g50963 i0 39.3 0.933673469387755 61 21 93.4 1 183 1 805 849 MEE6482045.1 hypothetical protein [Ascaphus truei] diamond 183 47 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
32615564 32615564 PRJNA846486_P_NODE_94060_length_162_cov_0.920354_g93964_i0 PRJNA846486 94060 162 0.920354 1.49097348 Staurois parvus 386267 Chordata Chordata 70.5 5.65e-13   NR CAI9569939.1 386267 g93964 i0 68.3 4.48148148148148 41 9 68.5 1 51 161 175 215 CAI9569939.1 unnamed protein product, partial [Staurois parvus] diamond 726 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
32646665 32646665 PRJNA846486_P_NODE_9240_length_406_cov_0.739496_g9145_i0 PRJNA846486 9240 406 0.739496 3.00235376 Myxine glutinosa 7769 Chordata Chordata 60.8 9.65e-8   NR XP_067964918.1 7769 g9145 i0 63.3 0.443349753694581 60 17 40.6 3 77 241 354 413 XP_067964918.1 WD repeat-containing protein 18 isoform X1 [Myxine glutinosa] diamond 180 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
32741639 32741639 PRJNA846486_P_NODE_54040_length_192_cov_1.692308_g53944_i0 PRJNA846486 54040 192 1.692308 3.24923136 Branchiostoma lanceolatum 7740 Chordata Chordata 69.3 7.86e-12   NR CAH1269567.1 7740 g53944 i0 50.8 1.90625 61 30 95.3 0 184 2 431 491 CAH1269567.1 CTSF [Branchiostoma lanceolatum] diamond 366 69.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;