RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA846486" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 12 ✖

bioproject 1

  • PRJNA846486 · 12 ✖

analysis 1

  • diamond · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26896768 26896768 PRJNA846486_P_NODE_85841_length_165_cov_0.896552_g85745_i0 PRJNA846486 85841 165 0.896552 1.4793108 Methanosarcina sp. 2213 Archaea Archaea 53.9 8.53e-7   NR HET8685202.1 2213 g85745 i0 73 0.672727272727273 37 10 67.3 0 1 111 140 176 HET8685202.1 hypothetical protein [Methanosarcina sp.] diamond 111 53.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
27094778 27094778 PRJNA846486_P_NODE_2342_length_733_cov_3.995614_g2269_i0 PRJNA846486 2342 733 3.9956140000000002 29.28785062 root 1 Root_unresolved Root_unresolved 79.7 4.14e-15   NR WP_112149389.1 2317 g2269 i0 39.5 0.994542974079127 81 49 33.2 0 524 282 6 86 WP_112149389.1 hypothetical protein [Methanosphaera stadtmanae] diamond 729 80.5 0.990062111801242 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae
27339386 27339386 PRJNA846486_P_NODE_93723_length_162_cov_0.920354_g93627_i0 PRJNA846486 93723 162 0.920354 1.49097348 Methanoregula sp. 2052170 Archaea Archaea 56.6 2.18e-8   NR WP_373009232.1 2052170 g93627 i0 53.7 1 54 25 100 0 1 162 9 62 WP_373009232.1 hypothetical protein [Methanoregula sp.] diamond 162 56.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula sp.
27789851 27789851 PRJNA846486_P_NODE_26344_length_255_cov_1.009709_g26248_i0 PRJNA846486 26344 255 1.009709 2.57475795 root 1 Root_unresolved Root_unresolved 48.5 3.92e-4   NR MBO7735052.1 66852 g26248 i0 83.3 1.61176470588235 24 4 28.2 0 127 198 365 388 MBO7735052.1 DNA (cytosine-5-)-methyltransferase [Methanobrevibacter sp.] diamond 411 48.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28579176 28579176 PRJNA846486_P_NODE_55067_length_191_cov_1.204225_g54971_i0 PRJNA846486 55067 191 1.204225 2.30006975 Halolamina 1075397 Archaea Archaea 104 4.9e-25   NR WP_237560304.1 1480675 g54971 i0 78.7 3.80104712041885 61 13 95.8 0 3 185 27 87 WP_237560304.1 halocyanin domain-containing protein [Halolamina sediminis] diamond 726 105 0.990476190476191 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halolamina Halolamina sediminis
28665528 28665528 PRJNA846486_P_NODE_81927_length_167_cov_0.881356_g81831_i0 PRJNA846486 81927 167 0.881356 1.47186452 Halosimplex pelagicum 869886 Archaea Archaea 67.8 1.86e-11   NR WP_179919177.1 869886 g81831 i0 63 0.970059880239521 54 20 97 0 3 164 91 144 WP_179919177.1 FAD-dependent oxidoreductase [Halosimplex pelagicum] diamond 162 67.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halosimplex Halosimplex pelagicum
29399959 29399959 PRJNA846486_P_NODE_71829_length_173_cov_0.830645_g71733_i0 PRJNA846486 71829 173 0.830645 1.43701585 root 1 Root_unresolved Root_unresolved 43.9 0.00446   NR HET8685655.1 2213 g71733 i0 38.8 1.52601156069364 49 29 83.2 1 30 173 53 101 HET8685655.1 hypothetical protein [Methanosarcina sp.] diamond 264 43.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
29675415 29675415 PRJNA846486_P_NODE_93650_length_162_cov_0.920354_g93554_i0 PRJNA846486 93650 162 0.920354 1.49097348 Methanofastidiosum sp. 2666341 Archaea Archaea 75.5 1.46e-16   NR HQK63505.1 2666341 g93554 i0 87.2 0.722222222222222 39 5 72.2 0 1 117 9 47 HQK63505.1 DNA methyltransferase [Methanofastidiosum sp.] diamond 117 75.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Candidatus Methanofastidiosia Candidatus Methanofastidiosales Candidatus Methanofastidiosaceae Candidatus Methanofastidiosum Methanofastidiosum sp.
30276240 30276240 PRJNA846486_P_NODE_85032_length_165_cov_1.534483_g84936_i0 PRJNA846486 85032 165 1.534483 2.53189695 Methanobacterium sp. 2164 Archaea Archaea 67.4 2.37e-11   NR MEN6551468.1 2164 g84936 i0 59.2 0.890909090909091 49 20 89.1 0 19 165 286 334 MEN6551468.1 BspA family leucine-rich repeat surface protein [Methanobacterium sp.] diamond 147 67.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
30402767 30402767 PRJNA846486_P_NODE_56393_length_189_cov_1.742857_g56297_i0 PRJNA846486 56393 189 1.742857 3.29399973 Methanosarcina sp. 2213 Archaea Archaea 62 2.81e-9   NR HET8685594.1 2213 g56297 i0 47.5 0.968253968253968 61 32 96.8 0 188 6 19 79 HET8685594.1 hypothetical protein [Methanosarcina sp.] diamond 183 62 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
31034541 31034541 PRJNA846486_P_NODE_86455_length_165_cov_0.896552_g86359_i0 PRJNA846486 86455 165 0.896552 1.4793108 Thermoplasmata archaeon 1906666 Archaea Archaea 85.9 7.89e-18   NR HID71171.1 1906666 g86359 i0 69.8 0.963636363636364 53 16 96.4 0 3 161 283 335 HID71171.1 hypothetical protein [Thermoplasmata archaeon] diamond 159 85.9 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
32497829 32497829 PRJNA846486_P_NODE_83099_length_166_cov_1.213675_g83003_i0 PRJNA846486 83099 166 1.213675 2.0147005 root 1 Root_unresolved Root_unresolved 83.6 5.42e-17   NR OPX80861.1 1811690 g83003 i0 70.9 10.8795180722892 55 16 99.4 0 2 166 615 669 OPX80861.1 MAG: hypothetical protein A4E50_01362 [Methanosaeta sp. PtaB.Bin087] diamond 1806 84.3 0.991696322657177 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanosaeta sp. PtaB.Bin087

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;