RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

25 rows where analysis = "diamond", bioproject = "PRJNA846110" and tax_phylum = "Bacteroidota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 25 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA846110 · 25 ✖

analysis 1

  • diamond · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4661484 4661484 PRJNA846110_P_NODE_23124_length_250_cov_1.401130_g22879_i0 PRJNA846110 23124 250 1.40113 3.502825 Flavobacteriales bacterium 2021391 Bacteria Bacteria 141 5.28e-39   NR HEY0978547.1 2021391 g22879 i0 77.1 0.996 83 19 99.6 0 250 2 227 309 HEY0978547.1 type IX secretion system membrane protein PorP/SprF [Flavobacteriales bacterium] diamond 249 141 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales     Flavobacteriales bacterium
9761032 9761032 PRJNA846110_P_NODE_17148_length_277_cov_1.431373_g16903_i0 PRJNA846110 17148 277 1.431373 3.96490321 Chryseobacterium sp. 1871047 Bacteria Bacteria 184 3.13e-54   NR MBN9313049.1 1871047 g16903 i0 100 0.996389891696751 92 0 99.6 0 277 2 187 278 MBN9313049.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB [Chryseobacterium sp.] diamond 276 184 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp.
21235081 21235081 PRJNA846110_P_NODE_18777_length_269_cov_1.443878_g18532_i0 PRJNA846110 18777 269 1.443878 3.88403182 Flavobacterium ginsenosidimutans 687844 Bacteria Bacteria 140 2.56e-37   NR WP_111289297.1 687844 g18532 i0 80.9 0.992565055762082 89 17 99.3 0 269 3 283 371 WP_111289297.1 sensor histidine kinase [Flavobacterium ginsenosidimutans] diamond 267 140 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium ginsenosidimutans
25059336 25059336 PRJNA846110_P_NODE_30740_length_232_cov_2.861635_g30495_i0 PRJNA846110 30740 232 2.861635 6.6389932 Flavobacterium 237 Bacteria Bacteria 146 8.44e-40   NR WP_182494091.1 237 g30495 i0 93.4 0.982758620689655 76 5 98.3 0 230 3 323 398 WP_182494091.1 MULTISPECIES: sugar transferase [Flavobacterium] diamond 228 146 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium  
26706286 26706286 PRJNA846110_P_NODE_15921_length_283_cov_1.190476_g15676_i0 PRJNA846110 15921 283 1.190476 3.36904708 Algoriphagus oliviformis 2811231 Bacteria Bacteria 173 4.51e-53   NR WP_236025653.1 2811231 g15676 i0 96.8 0.996466431095406 94 3 99.6 0 283 2 89 182 WP_236025653.1 RNA polymerase sigma factor [Algoriphagus oliviformis] diamond 282 173 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae Algoriphagus Algoriphagus oliviformis
26833329 26833329 PRJNA846110_P_NODE_23501_length_250_cov_0.870056_g23256_i0 PRJNA846110 23501 250 0.870056 2.17514 Chryseobacterium pennipullorum 2258963 Bacteria Bacteria 164 1.24e-48   NR WP_115927492.1 2258963 g23256 i0 100 0.996 83 0 99.6 0 250 2 67 149 WP_115927492.1 hypothetical protein [Chryseobacterium pennipullorum] diamond 249 164 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium pennipullorum
26928195 26928195 PRJNA846110_P_NODE_26682_length_246_cov_0.890173_g26437_i0 PRJNA846110 26682 246 0.890173 2.18982558 Bacteroidota bacterium 1898104 Bacteria Bacteria 166 2.12e-46   NR MES2593372.1 1898104 g26437 i0 92.6 0.98780487804878 81 6 98.8 0 244 2 467 547 MES2593372.1 S9 family peptidase [Bacteroidota bacterium] diamond 243 166 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
26928196 26928196 PRJNA846110_P_NODE_27882_length_244_cov_0.900585_g27637_i0 PRJNA846110 27882 244 0.900585 2.1974274 Paludibacter sp. 1898105 Bacteria Bacteria 126 4.66e-32   NR MBP6635942.1 1898105 g27637 i0 98.5 0.799180327868853 65 1 79.9 0 235 41 424 488 MBP6635942.1 hypothetical protein [Paludibacter sp.] diamond 195 126 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Paludibacteraceae Paludibacter Paludibacter sp.
27117740 27117740 PRJNA846110_P_NODE_27582_length_244_cov_1.567251_g27337_i0 PRJNA846110 27582 244 1.567251 3.82409244 Nubsella zeaxanthinifaciens 392412 Bacteria Bacteria 156 1.76e-44   NR WP_237088307.1 392412 g27337 i0 93.8 0.995901639344262 81 5 99.6 0 1 243 128 208 WP_237088307.1 cell division protein FtsQ/DivIB [Nubsella zeaxanthinifaciens] diamond 243 156 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Nubsella Nubsella zeaxanthinifaciens
27307806 27307806 PRJNA846110_P_NODE_14203_length_291_cov_1.853211_g13958_i0 PRJNA846110 14203 291 1.853211 5.39284401 Flavobacterium sp. NG2 3097547 Bacteria Bacteria 43.5 0.036   NR WP_320889623.1 3097547 g13958 i0 33.8 0.824742268041237 80 41 82.5 3 266 27 1082 1149 WP_320889623.1 hybrid sensor histidine kinase/response regulator transcription factor [Flavobacterium sp. NG2] diamond 240 43.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. NG2
28886265 28886265 PRJNA846110_P_NODE_30828_length_230_cov_2.751592_g30583_i0 PRJNA846110 30828 230 2.751592 6.3286616 Pedobacter ureilyticus 1393051 Bacteria Bacteria 116 1.7e-30   NR WP_138721603.1 1393051 g30583 i0 98.2 0.730434782608696 56 1 73 0 63 230 1 56 WP_138721603.1 CatA-like O-acetyltransferase [Pedobacter ureilyticus] diamond 168 116 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter ureilyticus
29044442 29044442 PRJNA846110_P_NODE_28088_length_244_cov_0.900585_g27843_i0 PRJNA846110 28088 244 0.900585 2.1974274 uncultured Flavobacterium sp. 165435 Bacteria Bacteria 160 1.12e-45   NR WP_308131143.1 165435 g27843 i0 100 0.995901639344262 81 0 99.6 0 243 1 83 163 WP_308131143.1 formimidoylglutamase [uncultured Flavobacterium sp.] diamond 243 160 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium uncultured Flavobacterium sp.
29233805 29233805 PRJNA846110_P_NODE_30809_length_231_cov_2.392405_g30564_i0 PRJNA846110 30809 231 2.392405 5.52645555 Fulvivirga sp. 1931237 Bacteria Bacteria 44.3 0.00901   NR WP_350105577.1 1931237 g30564 i0 44.7 0.61038961038961 47 23 61 1 161 21 56 99 WP_350105577.1 PAS domain-containing sensor histidine kinase [Fulvivirga sp.] diamond 141 44.3 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Fulvivirgaceae Fulvivirga Fulvivirga sp.
29557698 29557698 PRJNA846110_P_NODE_16450_length_280_cov_2.004831_g16205_i0 PRJNA846110 16450 280 2.004831 5.6135268 Bacteria 2 Bacteria Bacteria 51.2 5.95e-5   NR WP_310003438.1 280093 g16205 i0 44.4 5.18571428571429 54 25 52.5 1 116 262 243 296 WP_310003438.1 ankyrin repeat domain-containing protein [Flavobacterium granuli] diamond 1452 51.2 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium granuli
29580704 29580704 PRJNA846110_P_NODE_24590_length_248_cov_1.571429_g24345_i0 PRJNA846110 24590 248 1.571429 3.89714392 Bacteroidota bacterium 1898104 Bacteria Bacteria 43.1 0.0285   NR MBN8706367.1 1898104 g24345 i0 36.1 0.870967741935484 72 42 82.3 1 32 235 49 120 MBN8706367.1 hypothetical protein [Bacteroidota bacterium] diamond 216 43.1 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
29643791 29643791 PRJNA846110_P_NODE_23490_length_250_cov_0.870056_g23245_i0 PRJNA846110 23490 250 0.870056 2.17514 Telluribacter humicola 1720261 Bacteria Bacteria 43.1 0.0132   NR WP_207507104.1 1720261 g23245 i0 33.8 0.852 71 40 78 2 12 206 70 139 WP_207507104.1 response regulator [Telluribacter humicola] diamond 213 43.1 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Spirosomataceae Telluribacter Telluribacter humicola
29896922 29896922 PRJNA846110_P_NODE_30531_length_237_cov_3.030488_g30286_i0 PRJNA846110 30531 237 3.030488 7.18225656 Flavobacterium sp. J372 2898436 Bacteria Bacteria 74.7 1.86e-13   NR WP_257867489.1 2898436 g30286 i0 70.2 0.594936708860759 47 14 59.5 0 143 3 1 47 WP_257867489.1 GumC family protein [Flavobacterium sp. J372] diamond 141 74.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. J372
30339611 30339611 PRJNA846110_P_NODE_18412_length_271_cov_1.267677_g18167_i0 PRJNA846110 18412 271 1.267677 3.43540467 Saprospiraceae bacterium 2202734 Bacteria Bacteria 129 1.96e-32   NR MEO6037373.1 2202734 g18167 i0 71.1 0.996309963099631 90 26 99.6 0 2 271 782 871 MEO6037373.1 tetratricopeptide repeat protein [Saprospiraceae bacterium] diamond 270 129 1 Bacteria FCB group Pseudomonadati Bacteroidota Saprospiria Saprospirales Saprospiraceae   Saprospiraceae bacterium
31318627 31318627 PRJNA846110_P_NODE_30095_length_241_cov_0.916667_g29850_i0 PRJNA846110 30095 241 0.916667 2.20916747 Chryseobacterium sp. SNU WT5 2594269 Bacteria Bacteria 85.5 2.92e-17   NR WP_143853190.1 2594269 g29850 i0 56.8 0.921161825726141 74 32 92.1 0 232 11 286 359 WP_143853190.1 hypothetical protein [Chryseobacterium sp. SNU WT5] diamond 222 85.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium sp. SNU WT5
31540217 31540217 PRJNA846110_P_NODE_16736_length_279_cov_1.305825_g16491_i0 PRJNA846110 16736 279 1.305825 3.64325175 Empedobacter falsenii 343874 Bacteria Bacteria 188 3.7e-53   NR MFV0187807.1 343874 g16491 i0 94.6 0.989247311827957 92 5 98.9 0 3 278 727 818 MFV0187807.1 DUF4433 domain-containing protein [Empedobacter falsenii] diamond 276 188 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Empedobacter Empedobacter falsenii
31856331 31856331 PRJNA846110_P_NODE_30737_length_232_cov_3.094340_g30492_i0 PRJNA846110 30737 232 3.09434 7.1788688 Pedobacter sp. 1411316 Bacteria Bacteria 101 4.05e-24   NR RZK69367.1 1411316 g30492 i0 68.7 0.866379310344828 67 21 86.6 0 30 230 1 67 RZK69367.1 MAG: hypothetical protein EOO92_22065 [Pedobacter sp.] diamond 201 101 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter sp.
31982859 31982859 PRJNA846110_P_NODE_17958_length_273_cov_1.515000_g17713_i0 PRJNA846110 17958 273 1.515 4.13595 Sphingobacteriaceae bacterium 2021370 Bacteria Bacteria 106 2.5699999999999997e-24   NR MBK7667879.1 2021370 g17713 i0 56.7 4.9010989010989 90 39 98.9 0 4 273 506 595 MBK7667879.1 gliding motility-associated C-terminal domain-containing protein [Sphingobacteriaceae bacterium] diamond 1338 106 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae   Sphingobacteriaceae bacterium
32299729 32299729 PRJNA846110_P_NODE_17539_length_275_cov_1.524752_g17294_i0 PRJNA846110 17539 275 1.524752 4.193068 Bacteroidales bacterium 2030927 Bacteria Bacteria 133 1.87e-35   NR MFO8234111.1 2030927 g17294 i0 70.3 0.992727272727273 91 27 99.3 0 2 274 122 212 MFO8234111.1 DmsC/YnfH family molybdoenzyme membrane anchor subunit [Bacteroidales bacterium] diamond 273 133 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales     Bacteroidales bacterium
32299730 32299730 PRJNA846110_P_NODE_19419_length_266_cov_1.341969_g19174_i0 PRJNA846110 19419 266 1.341969 3.56963754 Segatella oris 28135 Bacteria Bacteria 108 1.86e-27   NR WP_380978528.1 28135 g19174 i0 66.7 3.22556390977444 69 23 77.8 0 48 254 69 137 WP_380978528.1 7-carboxy-7-deazaguanine synthase QueE [Segatella oris] diamond 858 108 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Segatella Segatella oris
32781186 32781186 PRJNA846110_P_NODE_15340_length_286_cov_1.112676_g15095_i0 PRJNA846110 15340 286 1.112676 3.18225336 Pseudomonadati 3379134 Bacteria Bacteria 113 5.51e-28   NR WP_147168837.1 1564516 g15095 i0 58.7 4.82517482517482 92 35 96.5 1 276 1 1 89 WP_147168837.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase [Phaeodactylibacter luteus] diamond 1380 113 1 Bacteria FCB group Pseudomonadati Bacteroidota Saprospiria Saprospirales Haliscomenobacteraceae Phaeodactylibacter Phaeodactylibacter luteus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;