RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA846110" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA846110 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27276098 27276098 PRJNA846110_P_NODE_21183_length_257_cov_1.652174_g20938_i0 PRJNA846110 21183 257 1.652174 4.24608718 Deinococcus xinjiangensis 457454 Bacteria Bacteria 166 1.21e-48   NR WP_353541603.1 457454 g20938 i0 98.8 0.980544747081712 84 1 98.1 0 1 252 234 317 WP_353541603.1 DsbA family protein [Deinococcus xinjiangensis] diamond 252 166 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus xinjiangensis
28822965 28822965 PRJNA846110_P_NODE_24528_length_248_cov_1.760000_g24283_i0 PRJNA846110 24528 248 1.76 4.3648 Deinococcus sp. YIM 134 47478 Bacteria Bacteria 159 5.390000000000001e-44   NR WP_331824833.1 3118910 g24283 i0 95.1 3.96774193548387 82 4 99.2 0 247 2 347 428 WP_331824833.1 bifunctional metallophosphatase/5'-nucleotidase [Deinococcus sp. YIM 134068] diamond 984 159 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus lichenicola
31540214 31540214 PRJNA846110_P_NODE_12336_length_310_cov_3.383966_g12091_i0 PRJNA846110 12336 310 3.383966 10.4902946 Thermus composti 532059 Bacteria Bacteria 184 1.97e-51   NR WP_188845830.1 532059 g12091 i0 91.7 1.04516129032258 108 4 99.7 1 1 309 174 281 WP_188845830.1 ATP-binding protein [Thermus composti] diamond 324 184 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus composti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;