RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA846110" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA846110 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26896738 26896738 PRJNA846110_P_NODE_16301_length_281_cov_1.394231_g16056_i0 PRJNA846110 16301 281 1.394231 3.91778911 Coccomyxa subellipsoidea 248742 Plants Plants 43.5 0.0309   NR KAK9906467.1 248742 g16056 i0 32.5 0.854092526690391 80 42 79 4 5 226 196 269 KAK9906467.1 hypothetical protein WJX75_002410 [Coccomyxa subellipsoidea] diamond 240 43.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
27600473 27600473 PRJNA846110_P_NODE_28784_length_243_cov_0.905882_g28539_i0 PRJNA846110 28784 243 0.905882 2.20129326 Eukaryota 2759 Plants Plants 135 7.299999999999999e-38   NR KAK9811451.1 41462 g28539 i0 80 26.6666666666667 80 16 98.8 0 2 241 113 192 KAK9811451.1 hypothetical protein WJX72_004104 [[Myrmecia] bisecta] diamond 6480 136 0.992647058823529 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
28160398 28160398 PRJNA846110_P_NODE_30845_length_230_cov_2.280255_g30600_i0 PRJNA846110 30845 230 2.280255 5.2445865 Scenedesmus sp. NREL 46B-D3 2650976 Plants Plants 43.1 0.0234   NR KAF6253678.1 2650976 g30600 i0 41.2 0.88695652173913 68 33 87.4 2 23 223 403 464 KAF6253678.1 hypothetical protein COO60DRAFT_397258 [Scenedesmus sp. NREL 46B-D3] diamond 204 43.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;