RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA846086" and tax_phylum = "Arthropoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA846086 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21234960 21234960 PRJNA846086_P_NODE_4497_length_245_cov_0.895349_g4431_i0 PRJNA846086 4497 245 0.895349 2.19360505 Malacostraca 6681 Arthropoda Arthropoda 159 1.4999999999999996e-47   NR XP_042230904.1 6706 g4431 i0 98.8 3.96734693877551 81 1 99.2 0 3 245 31 111 XP_042230904.1 60S ribosomal protein L11-like [Homarus americanus] diamond 972 160 0.99375 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Nephropidae Homarus Homarus americanus
29526352 29526352 PRJNA846086_P_NODE_430_length_574_cov_1.842315_g364_i0 PRJNA846086 430 574 1.842315 10.5748881 root 1 Root_unresolved Root_unresolved 53.1 2.18e-4   NR GBN61280.1 182803 g364 i0 50.9 2.55052264808362 53 26 27.7 0 450 292 1136 1188 GBN61280.1 putative RNA-directed DNA polymerase from transposon X-element [Araneus ventricosus] diamond 1464 53.1 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Araneae Araneidae Araneus Araneus ventricosus
30054570 30054570 PRJNA846086_P_NODE_3511_length_249_cov_0.875000_g3445_i0 PRJNA846086 3511 249 0.875 2.17875 Halocaridina rubra 373956 Arthropoda Arthropoda 128 2.18e-32   NR KAK7024269.1 373956 g3445 i0 67.9 0.939759036144578 78 25 94 0 14 247 19 96 KAK7024269.1 hypothetical protein SK128_007753 [Halocaridina rubra] diamond 234 128 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Atyidae Halocaridina Halocaridina rubra

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;