RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA846086" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA846086 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2108308 2108308 PRJNA846086_P_NODE_2502_length_265_cov_1.604167_g2436_i0 PRJNA846086 2502 265 1.604167 4.25104255 Deinococcus 1298 Bacteria Bacteria 152 2.8999999999999996e-42   NR WP_189642579.1 394230 g2436 i0 87.5 2.98867924528302 88 11 99.6 0 2 265 124 211 WP_189642579.1 aspartate--tRNA(Asn) ligase [Deinococcus piscis] diamond 792 152 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus piscis
26706280 26706280 PRJNA846086_P_NODE_5261_length_242_cov_0.911243_g5195_i0 PRJNA846086 5261 242 0.911243 2.20520806 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 159 9.73e-45   NR WP_299299240.1 1678694 g5195 i0 95 0.991735537190083 80 4 99.2 0 241 2 125 204 WP_299299240.1 phosphomannomutase/phosphoglucomutase [uncultured Fretibacterium sp.] diamond 240 159 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
27316231 27316231 PRJNA846086_P_NODE_5403_length_242_cov_0.911243_g5337_i0 PRJNA846086 5403 242 0.911243 2.20520806 Meiothermus 65551 Bacteria Bacteria 120 3.18e-32   NR MDQ3397725.1 1913990 g5337 i0 68.8 2.00826446280992 80 22 99.2 1 2 241 32 108 MDQ3397725.1 Uma2 family endonuclease [Deinococcota bacterium] diamond 486 120 1 Bacteria   Thermotogati Deinococcota         Deinococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;