RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA841653" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA841653 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27276036 27276036 PRJNA841653_P_NODE_47743_length_249_cov_0.875000_g47069_i0 PRJNA841653 47743 249 0.875 2.17875 Phytomonas sp. Hart1 223615 Euglenozoa other_Eukaryota 74.7 2.33e-13   NR CCW71629.1 223615 g47069 i0 55.2 0.698795180722892 58 26 69.9 0 16 189 1748 1805 CCW71629.1 unnamed protein product [Phytomonas sp. Hart1] diamond 174 74.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Phytomonas Phytomonas sp. Hart1
30149295 30149295 PRJNA841653_P_NODE_48592_length_248_cov_0.880000_g47918_i0 PRJNA841653 48592 248 0.88 2.1824 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 43.9 0.00796   NR KAG8344171.1 5699 g47918 i0 47.8 0.556451612903226 46 24 55.6 0 197 60 109 154 KAG8344171.1 hypothetical protein TRVL_05006 [Trypanosoma vivax] diamond 138 43.9 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;