RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA841653" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA841653 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27528601 27528601 PRJNA841653_P_NODE_37703_length_268_cov_1.538462_g37029_i0 PRJNA841653 37703 268 1.538462 4.12307816 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 105 1.14e-26   NR SPQ93437.1 37360 g37029 i0 61.7 2.5410447761194 81 31 90.7 0 243 1 25 105 SPQ93437.1 unnamed protein product [Plasmodiophora brassicae] diamond 681 105 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31919651 31919651 PRJNA841653_P_NODE_61897_length_241_cov_0.916667_g61223_i0 PRJNA841653 61897 241 0.916667 2.20916747 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 117 1.13e-28   NR CEO97276.1 37360 g61223 i0 66.2 0.95850622406639 77 26 95.9 0 232 2 303 379 CEO97276.1 hypothetical protein PBRA_000621 [Plasmodiophora brassicae] diamond 231 117 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32678196 32678196 PRJNA841653_P_NODE_44800_length_250_cov_1.621469_g44126_i0 PRJNA841653 44800 250 1.621469 4.0536725 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 126 1.6999999999999996e-31   NR CEO95672.1 37360 g44126 i0 67.1 0.984 82 27 98.4 0 3 248 119 200 CEO95672.1 hypothetical protein PBRA_009680 [Plasmodiophora brassicae] diamond 246 126 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32741589 32741589 PRJNA841653_P_NODE_60300_length_242_cov_0.911243_g59626_i0 PRJNA841653 60300 242 0.911243 2.20520806 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 122 4.78e-30   NR CEO95672.1 37360 g59626 i0 64.1 1.93388429752066 78 28 96.7 0 236 3 785 862 CEO95672.1 hypothetical protein PBRA_009680 [Plasmodiophora brassicae] diamond 468 122 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;