RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA841653" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA841653 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27316223 27316223 PRJNA841653_P_NODE_62323_length_241_cov_0.916667_g61649_i0 PRJNA841653 62323 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 92.8 7.11e-20   NR ADV41833.1 227086 g61649 i0 59.7 6.63485477178423 77 31 95.9 0 234 4 126 202 ADV41833.1 NADH dehydrogenase subunit 4 [Bigelowiella natans] diamond 1599 93.2 0.995708154506438 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
29801921 29801921 PRJNA841653_P_NODE_8551_length_578_cov_1.126733_g7887_i0 PRJNA841653 8551 578 1.126733 6.51251674 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 49.7 0.00269   NR MES1912847.1 1215613 g7887 i0 37.5 0.373702422145329 72 42 37.4 1 541 326 1 69 MES1912847.1 hypothetical protein [Cercozoa sp. M6MM] diamond 216 49.7 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
30244386 30244386 PRJNA841653_P_NODE_20112_length_364_cov_1.041237_g19438_i0 PRJNA841653 20112 364 1.041237 3.79010268 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 107 1.52e-24   NR MES1909471.1 1215613 g19438 i0 49.1 0.89010989010989 108 54 88.2 1 9 329 305 412 MES1909471.1 hypothetical protein [Cercozoa sp. M6MM] diamond 324 107 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;