RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA841653" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA841653 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22507640 22507640 PRJNA841653_P_NODE_51538_length_247_cov_0.885057_g50864_i0 PRJNA841653 51538 247 0.885057 2.18609079 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 84.3 1.12e-17   NR MCX6725195.1 2026720 g50864 i0 58.8 0.825910931174089 68 28 82.6 0 241 38 165 232 MCX6725195.1 response regulator transcription factor [Candidatus Saccharibacteria bacterium] diamond 204 84.3 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
27307758 27307758 PRJNA841653_P_NODE_50643_length_247_cov_0.885057_g49969_i0 PRJNA841653 50643 247 0.885057 2.18609079 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 72.4 6.74e-13   NR MFA5004344.1 2973664 g49969 i0 48.7 0.923076923076923 76 39 92.3 0 246 19 5 80 MFA5004344.1 restriction endonuclease [Candidatus Saccharimonadales bacterium] diamond 228 72.4 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
32457691 32457691 PRJNA841653_P_NODE_59099_length_242_cov_1.704142_g58425_i0 PRJNA841653 59099 242 1.704142 4.12402364 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 61.2 1.65e-9   NR MDB5165431.1 2026720 g58425 i0 75.7 4.37603305785124 37 9 45.9 0 112 2 14 50 MDB5165431.1 rnhA [Candidatus Saccharibacteria bacterium] diamond 1059 61.2 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;