RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA841653" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA841653 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3381508 3381508 PRJNA841653_P_NODE_44163_length_251_cov_0.865169_g43489_i0 PRJNA841653 44163 251 0.865169 2.17157419 Armatimonadota bacterium 2033014 Bacteria Bacteria 144 4.55e-38   NR MES2464351.1 2033014 g43489 i0 85 1.91235059760956 80 12 95.6 0 10 249 359 438 MES2464351.1 ATP-dependent zinc metalloprotease FtsH [Armatimonadota bacterium] diamond 480 144 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
27284430 27284430 PRJNA841653_P_NODE_45723_length_250_cov_0.870056_g45049_i0 PRJNA841653 45723 250 0.870056 2.17514 Bacteria 2 Bacteria Bacteria 136 5.87e-36   NR MES2458961.1 2033014 g45049 i0 81.7 2.976 82 15 98.4 0 4 249 175 256 MES2458961.1 glucose-6-phosphate isomerase [Armatimonadota bacterium] diamond 744 136 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32394327 32394327 PRJNA841653_P_NODE_58599_length_243_cov_0.905882_g57925_i0 PRJNA841653 58599 243 0.905882 2.20129326 Fimbriimonadales bacterium 2682145 Bacteria Bacteria 114 4.4699999999999995e-30   NR GIV03803.1 2682145 g57925 i0 75.6 1.92592592592593 78 19 96.3 0 10 243 49 126 GIV03803.1 MAG: hypothetical protein KatS3mg015_2633 [Fimbriimonadales bacterium] diamond 468 114 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales     Fimbriimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;