RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA841653" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 6 ✖

bioproject 1

  • PRJNA841653 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27339294 27339294 PRJNA841653_P_NODE_44563_length_251_cov_0.865169_g43889_i0 PRJNA841653 44563 251 0.865169 2.17157419 Marsupial endogenous gammaretrovirus 2 3386030 Viruses Viruses 56.6 5.24e-7   NR DBA62710.1 3386030 g43889 i0 43.1 0.609561752988048 51 29 61 0 44 196 347 397 DBA62710.1 TPA_asm: Gag [Marsupial endogenous gammaretrovirus 2] diamond 153 56.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Marsupial endogenous gammaretrovirus 2
27371087 27371087 PRJNA841653_P_NODE_62783_length_241_cov_0.875000_g62109_i0 PRJNA841653 62783 241 0.875 2.10875 Pinus nigra virus 1 2267679 Viruses Viruses 51.2 3.87e-5   NR AXB54821.1 2267679 g62109 i0 90.9 0.273858921161826 22 2 27.4 0 220 155 414 435 AXB54821.1 polyprotein [Pinus nigra virus 1] diamond 66 51.2 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
27749923 27749923 PRJNA841653_P_NODE_36584_length_272_cov_1.407035_g35910_i0 PRJNA841653 36584 272 1.407035 3.8271352 Pinus nigra virus 1 2267679 Viruses Viruses 118 1.21e-28   NR AXB54821.1 2267679 g35910 i0 64.8 0.970588235294118 88 30 96 1 5 265 1617 1704 AXB54821.1 polyprotein [Pinus nigra virus 1] diamond 264 118 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
28791475 28791475 PRJNA841653_P_NODE_50707_length_247_cov_0.885057_g50033_i0 PRJNA841653 50707 247 0.885057 2.18609079 Pinus nigra virus 1 2267679 Viruses Viruses 58.5 1.1e-7   NR AXB54821.1 2267679 g50033 i0 37.8 0.995951417004049 82 51 99.6 0 1 246 1952 2033 AXB54821.1 polyprotein [Pinus nigra virus 1] diamond 246 58.5 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
29044368 29044368 PRJNA841653_P_NODE_51148_length_247_cov_0.885057_g50474_i0 PRJNA841653 51148 247 0.885057 2.18609079 Pinus nigra virus 1 2267679 Viruses Viruses 132 1.6200000000000002e-33   NR AXB54821.1 2267679 g50474 i0 76.6 0.935222672064777 77 18 93.5 0 232 2 792 868 AXB54821.1 polyprotein [Pinus nigra virus 1] diamond 231 132 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1
31318573 31318573 PRJNA841653_P_NODE_44335_length_251_cov_0.865169_g43661_i0 PRJNA841653 44335 251 0.865169 2.17157419 Pinus nigra virus 1 2267679 Viruses Viruses 132 9.1e-34   NR AXB54821.1 2267679 g43661 i0 77.5 0.956175298804781 80 18 95.6 0 241 2 1898 1977 AXB54821.1 polyprotein [Pinus nigra virus 1] diamond 240 132 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae   Pinus nigra virus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;