RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA841653" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA841653 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27023059 27023059 PRJNA841653_P_NODE_59922_length_242_cov_0.911243_g59248_i0 PRJNA841653 59922 242 0.911243 2.20520806 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 47.8 6.3e-4   NR XP_013759550.1 461836 g59248 i0 76.9 0.322314049586777 26 6 32.2 0 239 162 4 29 XP_013759550.1 uncharacterized protein AMSG_02652 [Thecamonas trahens ATCC 50062] diamond 78 47.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28475908 28475908 PRJNA841653_P_NODE_48586_length_248_cov_0.880000_g47912_i0 PRJNA841653 48586 248 0.88 2.1824 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 46.6 0.00174   NR XP_013754456.1 461836 g47912 i0 33.8 0.786290322580645 65 41 78.6 1 5 199 649 711 XP_013754456.1 uncharacterized protein AMSG_08923 [Thecamonas trahens ATCC 50062] diamond 195 46.6 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29044372 29044372 PRJNA841653_P_NODE_53008_length_246_cov_0.890173_g52334_i0 PRJNA841653 53008 246 0.890173 2.18982558 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 88.2 4.01e-18   NR XP_013762673.1 461836 g52334 i0 52.6 0.926829268292683 76 34 92.7 1 19 246 639 712 XP_013762673.1 1,4-alpha-glucan branching enzyme [Thecamonas trahens ATCC 50062] diamond 228 88.2 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;