RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA839281" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA839281 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25055946 25055946 PRJNA839281_S_NODE_29880_length_165_cov_0.879310_g29611_i0 PRJNA839281 29880 165 0.87931 1.4508615 Pseudomonadati 3379134 Bacteria Bacteria 99.8 2.0399999999999994e-24   NR RLB65242.1 2026735 g29611 i0 81.8 3 55 10 100 0 165 1 76 130 RLB65242.1 MAG: hydrolase [Deltaproteobacteria bacterium] diamond 495 99.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28539243 28539243 PRJNA839281_S_NODE_20547_length_184_cov_1.133333_g20278_i0 PRJNA839281 20547 184 1.133333 2.08533272 Myxococcus sp. 1929279 Bacteria Bacteria 96.7 5.600000000000001e-23   NR HZI14346.1 1929279 g20278 i0 68.9 2.98369565217391 61 19 99.5 0 184 2 153 213 HZI14346.1 maleylacetoacetate isomerase [Myxococcus sp.] diamond 549 96.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus sp.
29422854 29422854 PRJNA839281_S_NODE_22249_length_178_cov_2.100775_g21980_i0 PRJNA839281 22249 178 2.100775 3.7393795 Corallococcus sp. AS-1-12 2874598 Bacteria Bacteria 42.4 0.0166   NR WP_223745166.1 2874598 g21980 i0 29.8 0.960674157303371 57 40 96.1 0 5 175 107 163 WP_223745166.1 RelA/SpoT domain-containing protein, partial [Corallococcus sp. AS-1-12] diamond 171 42.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. AS-1-12
29454258 29454258 PRJNA839281_S_NODE_31510_length_164_cov_0.886957_g31241_i0 PRJNA839281 31510 164 0.886957 1.45460948 Myxococcota bacterium 2818507 Bacteria Bacteria 114 1.07e-27   NR MCU0674061.1 2818507 g31241 i0 98 0.932926829268293 51 1 93.3 0 155 3 1 51 MCU0674061.1 valine--tRNA ligase [Myxococcota bacterium] diamond 153 114 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29612179 29612179 PRJNA839281_S_NODE_28530_length_166_cov_0.871795_g28261_i0 PRJNA839281 28530 166 0.871795 1.4471797 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 63.5 4.75e-10   NR MBN8541362.1 2026735 g28261 i0 52.7 1.98795180722892 55 26 99.4 0 166 2 70 124 MBN8541362.1 GTPase Era [Deltaproteobacteria bacterium] diamond 330 63.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;