RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA839281" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA839281 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27442675 27442675 PRJNA839281_S_NODE_21943_length_179_cov_1.961538_g21674_i0 PRJNA839281 21943 179 1.961538 3.51115302 Gammaretrovirus 153135 Viruses Viruses 116 1.52e-28   NR NP_057933.2 11801 g21674 i0 98.3 1.97765363128492 59 1 98.9 0 2 178 1265 1323 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 354 116 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
29991537 29991537 PRJNA839281_S_NODE_13111_length_221_cov_1.877907_g12842_i0 PRJNA839281 13111 221 1.877907 4.15017447 Gammaretrovirus murleu 3428959 Viruses Viruses 147 4.159999999999999e-42   NR 1MML_A 11801 g12842 i0 100 9.90950226244344 73 0 99.1 0 219 1 185 257 1MML_A Chain A, MMLV REVERSE TRANSCRIPTASE [Moloney murine leukemia virus] diamond 2190 147 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
32781172 32781172 PRJNA839281_S_NODE_8340_length_276_cov_1.995595_g8071_i0 PRJNA839281 8340 276 1.995595 5.5078422 Gammaretrovirus 153135 Viruses Viruses 192 1.9599999999999999e-54   NR AAA79247.1 11786 g8071 i0 98.9 11 92 1 100 0 1 276 231 322 AAA79247.1 putative reverse transcriptase [Murine leukemia virus] diamond 3036 192 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;