RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA839281" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA839281 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26737711 26737711 PRJNA839281_S_NODE_15121_length_208_cov_1.345912_g14852_i0 PRJNA839281 15121 208 1.345912 2.79949696 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 61.2 5.17e-9   NR WP_296864657.1 253161 g14852 i0 39.4 1.93269230769231 66 40 95.2 0 8 205 184 249 WP_296864657.1 phosphotransferase [uncultured Methanobrevibacter sp.] diamond 402 61.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
27749911 27749911 PRJNA839281_S_NODE_33964_length_163_cov_0.894737_g33695_i0 PRJNA839281 33964 163 0.894737 1.45842131 Halobacteriales archaeon 1904752 Archaea Archaea 42.7 0.0129   NR MFB6299259.1 1904752 g33695 i0 42.3 0.957055214723926 52 28 95.7 1 7 162 102 151 MFB6299259.1 tail fiber domain-containing protein [Halobacteriales archaeon] diamond 156 42.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales     Halobacteriales archaeon
30497135 30497135 PRJNA839281_S_NODE_31833_length_164_cov_0.886957_g31564_i0 PRJNA839281 31833 164 0.886957 1.45460948 Haloarcula nitratireducens 2487749 Archaea Archaea 74.3 7.29e-14   NR WP_220582709.1 2487749 g31564 i0 59.3 0.98780487804878 54 22 98.8 0 164 3 211 264 WP_220582709.1 LEA type 2 family protein [Haloarcula nitratireducens] diamond 162 74.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula nitratireducens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;