RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA835051" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA835051 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30276081 30276081 PRJNA835051_S_NODE_109192_length_163_cov_1.583333_g108896_i0 PRJNA835051 109192 163 1.583333 2.58083279 Fusobacterium necrophorum 859 Bacteria Bacteria 39.7 0.023   NR WP_222702847.1 859 g108896 i0 50 0.699386503067485 38 19 69.9 0 155 42 21 58 WP_222702847.1 hypothetical protein, partial [Fusobacterium necrophorum] diamond 114 39.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
31413490 31413490 PRJNA835051_S_NODE_10416_length_322_cov_9.365591_g10120_i0 PRJNA835051 10416 322 9.365591 30.15720302 Fusobacterium necrophorum 859 Bacteria Bacteria 72 3.69e-12   NR WP_394292705.1 859 g10120 i0 45.7 4.22981366459627 81 44 75.5 0 75 317 199 279 WP_394292705.1 hypothetical protein [Fusobacterium necrophorum] diamond 1362 72.4 0.994475138121547 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum
32867223 32867223 PRJNA835051_S_NODE_118880_length_157_cov_1.666667_g118584_i0 PRJNA835051 118880 157 1.666667 2.61666719 Fusobacterium necrophorum subsp. funduliforme 143387 Bacteria Bacteria 39.3 0.0446   NR KYM59904.1 143387 g118584 i0 51.4 0.707006369426752 37 17 70.7 1 115 5 2 37 KYM59904.1 hypothetical protein A2U09_11045 [Fusobacterium necrophorum subsp. funduliforme] diamond 111 39.3 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;