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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA833575" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA833575 · 13 ✖

analysis 1

  • diamond · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8476876 8476876 PRJNA833575_P_NODE_10247_length_448_cov_2.530343_g10110_i0 PRJNA833575 10247 448 2.530343 11.33593664 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 216 1.3e-65   NR KYO20403.1 8496 g10110 i0 78.7 91.7410714285714 136 29 91.1 0 39 446 35 170 KYO20403.1 40S ribosomal protein S14 [Alligator mississippiensis] diamond 41100 218 0.990825688073395 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
9752319 9752319 PRJNA833575_P_NODE_27948_length_282_cov_0.892019_g27811_i0 PRJNA833575 27948 282 0.892019 2.51549358 Oikopleura dioica 34765 Chordata Chordata 118 1.15e-31   NR CAG5105686.1 34765 g27811 i0 59.1 3.95744680851064 93 38 98.9 0 2 280 4 96 CAG5105686.1 Oidioi.mRNA.OKI2018_I69.chr1.g2360.t1.cds [Oikopleura dioica] diamond 1116 118 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
17402334 17402334 PRJNA833575_P_NODE_10814_length_438_cov_1.463415_g10677_i0 PRJNA833575 10814 438 1.463415 6.4097577 Opisthokonta 33154 Chordata Chordata 170 1.34e-50   NR XP_035660024.1 7739 g10677 i0 67.4 18.8561643835616 132 39 90.4 1 41 436 14 141 XP_035660024.1 60S ribosomal protein L11 isoform X1 [Branchiostoma floridae] diamond 8259 170 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
26746244 26746244 PRJNA833575_P_NODE_39501_length_234_cov_0.872727_g39364_i0 PRJNA833575 39501 234 0.872727 2.04218118 Metazoa 33208 Chordata Chordata 160 9.01e-44   NR XP_039253901.1 7725 g39364 i0 89.6 23.6794871794872 77 8 98.7 0 233 3 395 471 XP_039253901.1 glutamine--tRNA ligase-like [Styela clava] diamond 5541 160 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
26905039 26905039 PRJNA833575_P_NODE_40721_length_232_cov_1.521472_g40584_i0 PRJNA833575 40721 232 1.521472 3.52981504 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 53.9 3.69e-6   NR XP_039256696.1 7725 g40584 i0 41 8.0948275862069 78 42 98.3 3 232 5 114 189 XP_039256696.1 protein disulfide-isomerase 2-like isoform X2 [Styela clava] diamond 1878 54.3 0.992633517495396 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
27749853 27749853 PRJNA833575_P_NODE_42584_length_230_cov_1.322981_g42447_i0 PRJNA833575 42584 230 1.322981 3.0428563 Balaenoptera physalus 9770 Chordata Chordata 51.2 1.79e-5   NR KAB0406035.1 9770 g42447 i0 66.7 0.58695652173913 45 15 58.7 0 135 1 42 86 KAB0406035.1 hypothetical protein E2I00_012731, partial [Balaenoptera physalus] diamond 135 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera physalus
27979103 27979103 PRJNA833575_P_NODE_23265_length_308_cov_1.205021_g23128_i0 PRJNA833575 23265 308 1.205021 3.71146468 Chondrichthyes 7777 Chordata Chordata 99.8 1.31e-24   NR GCB79772.1 75743 g23128 i0 71.2 2.82467532467532 73 21 71.1 0 227 9 5 77 GCB79772.1 hypothetical protein [Scyliorhinus torazame] diamond 870 100 0.998 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus torazame
28484384 28484384 PRJNA833575_P_NODE_39606_length_234_cov_0.872727_g39469_i0 PRJNA833575 39606 234 0.872727 2.04218118 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 128 4.14e-36   NR 3J0L_L 9986 g39469 i0 79.2 2.96153846153846 77 16 98.7 0 234 4 5 81 3J0L_L Chain L, Ribosomal protein S23 [Oryctolagus cuniculus] diamond 693 128 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
28602194 28602194 PRJNA833575_P_NODE_20207_length_328_cov_2.590734_g20070_i0 PRJNA833575 20207 328 2.590734 8.49760752 Clavelina lepadiformis 159417 Chordata Chordata 70.1 2.52e-11   NR CAK8684965.1 159417 g20070 i0 49.2 2.35975609756098 61 31 55.8 0 319 137 572 632 CAK8684965.1 unnamed protein product [Clavelina lepadiformis] diamond 774 70.1 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
30063011 30063011 PRJNA833575_P_NODE_20211_length_328_cov_2.142857_g20074_i0 PRJNA833575 20211 328 2.142857 7.02857096 Cricetidae 337677 Chordata Chordata 56.2 1.53e-6   NR XP_013210164.1 79684 g20074 i0 49.2 2.77134146341463 63 28 57.6 3 3 191 7 65 XP_013210164.1 N-acetyl-D-glucosamine kinase isoform X2 [Microtus ochrogaster] diamond 909 56.6 0.992932862190813 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Microtus Microtus ochrogaster
30907876 30907876 PRJNA833575_P_NODE_42434_length_230_cov_2.602484_g42297_i0 PRJNA833575 42434 230 2.602484 5.9857132 Myodes glareolus 447135 Chordata Chordata 57.4 1.96e-7   NR KAK7801371.1 447135 g42297 i0 38.4 0.952173913043478 73 45 95.2 0 222 4 16 88 KAK7801371.1 hypothetical protein U0070_009217 [Myodes glareolus] diamond 219 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Myodes Myodes glareolus
31959666 31959666 PRJNA833575_P_NODE_45537_length_227_cov_0.911392_g45400_i0 PRJNA833575 45537 227 0.911392 2.06885984 Metazoa 33208 Chordata Chordata 49.3 1.5e-4   NR XP_035685701.1 7739 g45400 i0 38.6 4.46696035242291 70 38 85.9 1 2 196 628 697 XP_035685701.1 epithelial cell-transforming sequence 2 oncogene-like [Branchiostoma floridae] diamond 1014 49.7 0.991951710261569 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32561150 32561150 PRJNA833575_P_NODE_20099_length_329_cov_1.600000_g19962_i0 PRJNA833575 20099 329 1.6 5.264 Mammalia 40674 Chordata Chordata 228 2.2499999999999994e-67   NR KAJ8782376.1 9764 g19962 i0 99.1 38.7629179331307 109 1 99.4 0 327 1 79 187 KAJ8782376.1 hypothetical protein J1605_010084 [Eschrichtius robustus] diamond 12753 229 0.995633187772926 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;