RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA832865" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA832865 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30379457 30379457 PRJNA832865_S_NODE_14312_length_1093_cov_5.357843_g10573_i0 PRJNA832865 14312 1093 5.357843 58.56122399 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.4 0.00106   NR CAI2387754.1 5936 g10573 i0 40.4 1.45471180237877 52 31 14.3 0 591 746 195 246 CAI2387754.1 unnamed protein product [Moneuplotes crassus] diamond 1590 52.4 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus
31769841 31769841 PRJNA832865_S_NODE_45297_length_383_cov_1.422581_g40211_i0 PRJNA832865 45297 383 1.422581 5.44848523 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52 1.01e-4   NR CAD8176653.1 43137 g40211 i0 52.6 0.60313315926893 38 18 29.8 0 229 116 392 429 CAD8176653.1 unnamed protein product [Paramecium octaurelia] diamond 231 52.4 0.99236641221374 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium octaurelia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;