RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA832865" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA832865 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28539137 28539137 PRJNA832865_S_NODE_41167_length_411_cov_0.991124_g36081_i0 PRJNA832865 41167 411 0.991124 4.07351964 Cryptosporidium felis 83540 SAR_Eukaryotes SAR_Eukaryotes 60.5 1.32e-7   NR KAF7455888.1 83540 g36081 i0 42.5 0.583941605839416 80 40 54 1 355 134 293 372 KAF7455888.1 putative eukaryotic translation initiation factor 4A, isoform 3 [Cryptosporidium felis] diamond 240 60.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium felis
31223460 31223460 PRJNA832865_S_NODE_79235_length_276_cov_1.137931_g74149_i0 PRJNA832865 79235 276 1.137931 3.14068956 Plasmodium falciparum Dd2 57267 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0306   NR KOB86363.1 57267 g74149 i0 33.8 0.869565217391304 80 47 80.4 1 41 262 261 340 KOB86363.1 hypothetical protein PFDG_01948 [Plasmodium falciparum Dd2] diamond 240 43.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;