RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA832865" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA832865 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28010935 28010935 PRJNA832865_S_NODE_78725_length_277_cov_1.122549_g73639_i0 PRJNA832865 78725 277 1.122549 3.10946073 root 1 Root_unresolved Root_unresolved 43.1 0.0092   NR HJJ67539.1 2058474 g73639 i0 45.5 0.953068592057762 44 22 45.5 1 180 55 21 64 HJJ67539.1 hypothetical protein [Methanocorpusculum sp.] diamond 264 43.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
29643604 29643604 PRJNA832865_S_NODE_104470_length_245_cov_0.895349_g99384_i0 PRJNA832865 104470 245 0.895349 2.19360505 Candidatus Nanohaloarchaea archaeon 2594798 Archaea Archaea 66.2 1.98e-10   NR MFB6245005.1 2594798 g99384 i0 44.3 0.96734693877551 79 37 96.7 1 2 238 443 514 MFB6245005.1 ATP-dependent endonuclease [Candidatus Nanohaloarchaea archaeon] diamond 237 66.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Candidatus Nanohaloarchaea       Candidatus Nanohaloarchaea archaeon
31381894 31381894 PRJNA832865_S_NODE_107096_length_243_cov_0.905882_g102010_i0 PRJNA832865 107096 243 0.905882 2.20129326 Methanoregula boonei 358766 Archaea Archaea 42.4 0.0495   NR WP_012107125.1 358766 g102010 i0 46.5 0.530864197530864 43 22 51.9 1 69 194 120 162 WP_012107125.1 MFS transporter [Methanoregula boonei] diamond 129 42.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula Methanoregula boonei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;