RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where analysis = "diamond", bioproject = "PRJNA832865" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Sar · 18 ✖

bioproject 1

  • PRJNA832865 · 18 ✖

analysis 1

  • diamond · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26737597 26737597 PRJNA832865_S_NODE_105521_length_244_cov_0.900585_g100435_i0 PRJNA832865 105521 244 0.900585 2.1974274 Nannochloropsis salina CCMP1776 1027361 SAR_Eukaryotes SAR_Eukaryotes 84 1.19e-16   NR TFJ85916.1 1027361 g100435 i0 56 2.05327868852459 84 30 98.4 2 2 241 514 594 TFJ85916.1 hypothetical protein NSK_002736 [Nannochloropsis salina CCMP1776] diamond 501 84 1 Eukaryota Sar     Eustigmatophyceae Eustigmatales Monodopsidaceae Microchloropsis Microchloropsis salina
27275923 27275923 PRJNA832865_S_NODE_54143_length_341_cov_1.723881_g49057_i0 PRJNA832865 54143 341 1.723881 5.87843421 Ectocarpus sp. CCAP 131 74372 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0416   NR CAB1102039.1 867726 g49057 i0 55.9 1.49560117302053 34 15 29.9 0 199 300 33 66 CAB1102039.1 unnamed protein product [Ectocarpus sp. CCAP 1310/34] diamond 510 43.9 1 Eukaryota Sar     Phaeophyceae Ectocarpales Ectocarpaceae Ectocarpus Ectocarpus sp. CCAP 1310/34
27505718 27505718 PRJNA832865_S_NODE_31083_length_518_cov_1.384270_g26019_i0 PRJNA832865 31083 518 1.38427 7.1705186 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 46.2 0.0333   NR ETO06867.1 46433 g26019 i0 44.3 0.631274131274131 61 33 34.7 1 501 322 1132 1192 ETO06867.1 hypothetical protein RFI_30525, partial [Reticulomyxa filosa] diamond 327 46.6 0.991416309012876 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28381026 28381026 PRJNA832865_S_NODE_66106_length_304_cov_1.939394_g61020_i0 PRJNA832865 66106 304 1.939394 5.89575776 Durusdinium trenchii 1381693 SAR_Eukaryotes SAR_Eukaryotes 129 1.93e-35   NR CAK9049412.1 1381693 g61020 i0 61.9 1.86513157894737 97 37 95.7 0 293 3 1 97 CAK9049412.1 60S ribosomal protein L18a [Durusdinium trenchii] diamond 567 129 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Durusdinium Durusdinium trenchii
28389514 28389514 PRJNA832865_S_NODE_107546_length_243_cov_0.905882_g102460_i0 PRJNA832865 107546 243 0.905882 2.20129326 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 150 1.5e-41   NR KAG7369706.1 303405 g102460 i0 85.2 4 81 12 100 0 243 1 46 126 KAG7369706.1 3-isopropylmalate dehydrogenase [Nitzschia inconspicua] diamond 972 150 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua
28539137 28539137 PRJNA832865_S_NODE_41167_length_411_cov_0.991124_g36081_i0 PRJNA832865 41167 411 0.991124 4.07351964 Cryptosporidium felis 83540 SAR_Eukaryotes SAR_Eukaryotes 60.5 1.32e-7   NR KAF7455888.1 83540 g36081 i0 42.5 0.583941605839416 80 40 54 1 355 134 293 372 KAF7455888.1 putative eukaryotic translation initiation factor 4A, isoform 3 [Cryptosporidium felis] diamond 240 60.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium felis
29422775 29422775 PRJNA832865_S_NODE_93009_length_252_cov_3.262570_g87923_i0 PRJNA832865 93009 252 3.26257 8.2216764 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 42.7 0.0431   NR KAF4685390.1 32597 g87923 i0 37.5 0.666666666666667 56 31 64.3 2 85 246 98 151 KAF4685390.1 hypothetical protein FOZ60_006604 [Perkinsus olseni] diamond 168 42.7 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
29431289 29431289 PRJNA832865_S_NODE_110869_length_241_cov_0.916667_g105783_i0 PRJNA832865 110869 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 126 9.04e-32   NR KAJ8575517.1 4785 g105783 i0 74 45.1244813278008 77 20 95.9 0 11 241 237 313 KAJ8575517.1 hypothetical protein ON010_g3696 [Phytophthora cinnamomi] diamond 10875 126 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
29738470 29738470 PRJNA832865_S_NODE_79170_length_276_cov_1.256158_g74084_i0 PRJNA832865 79170 276 1.256158 3.46699608 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 61.2 1.74e-8   NR KAJ0391852.1 114742 g74084 i0 41.2 2.92391304347826 68 40 73.9 0 251 48 652 719 KAJ0391852.1 hypothetical protein P43SY_010752 [Pythium insidiosum] diamond 807 61.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
29928388 29928388 PRJNA832865_S_NODE_101911_length_246_cov_1.265896_g96825_i0 PRJNA832865 101911 246 1.265896 3.11410416 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 45.8 0.00319   NR KAL3791438.1 29204 g96825 i0 48 0.609756097560976 50 25 59.8 1 229 83 238 287 KAL3791438.1 hypothetical protein HJC23_011494 [Cyclotella cryptica] diamond 150 45.8 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
30149210 30149210 PRJNA832865_S_NODE_95912_length_250_cov_0.870056_g90826_i0 PRJNA832865 95912 250 0.870056 2.17514 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 79 3.3e-15   NR SPR01615.1 37360 g90826 i0 69.4 1.176 49 15 58.8 0 147 1 104 152 SPR01615.1 unnamed protein product [Plasmodiophora brassicae] diamond 294 79 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30379457 30379457 PRJNA832865_S_NODE_14312_length_1093_cov_5.357843_g10573_i0 PRJNA832865 14312 1093 5.357843 58.56122399 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.4 0.00106   NR CAI2387754.1 5936 g10573 i0 40.4 1.45471180237877 52 31 14.3 0 591 746 195 246 CAI2387754.1 unnamed protein product [Moneuplotes crassus] diamond 1590 52.4 1 Eukaryota Sar   Ciliophora Spirotrichea Euplotida Euplotidae Moneuplotes Moneuplotes crassus
30686373 30686373 PRJNA832865_S_NODE_86153_length_263_cov_2.147368_g81067_i0 PRJNA832865 86153 263 2.147368 5.64757784 Placilonga atlantica 2811350 SAR_Eukaryotes SAR_Eukaryotes 112 1.51e-26   NR UGN13547.1 2811350 g81067 i0 61.9 0.958174904942966 84 32 95.8 0 263 12 776 859 UGN13547.1 elongation factor 2 [Placilonga atlantica] diamond 252 112 1 Eukaryota Sar     Bigyra Placidida Placidiaceae Placilonga Placilonga atlantica
31223460 31223460 PRJNA832865_S_NODE_79235_length_276_cov_1.137931_g74149_i0 PRJNA832865 79235 276 1.137931 3.14068956 Plasmodium falciparum Dd2 57267 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0306   NR KOB86363.1 57267 g74149 i0 33.8 0.869565217391304 80 47 80.4 1 41 262 261 340 KOB86363.1 hypothetical protein PFDG_01948 [Plasmodium falciparum Dd2] diamond 240 43.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
31769841 31769841 PRJNA832865_S_NODE_45297_length_383_cov_1.422581_g40211_i0 PRJNA832865 45297 383 1.422581 5.44848523 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52 1.01e-4   NR CAD8176653.1 43137 g40211 i0 52.6 0.60313315926893 38 18 29.8 0 229 116 392 429 CAD8176653.1 unnamed protein product [Paramecium octaurelia] diamond 231 52.4 0.99236641221374 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium octaurelia
31919541 31919541 PRJNA832865_S_NODE_58037_length_328_cov_0.984314_g52951_i0 PRJNA832865 58037 328 0.984314 3.22854992 Cladocopium goreaui 2562237 SAR_Eukaryotes SAR_Eukaryotes 80.9 1.13e-15   NR CAL1159238.1 2562237 g52951 i0 40.7 1.03353658536585 113 63 99.7 1 328 2 116 228 CAL1159238.1 unnamed protein product, partial [Cladocopium goreaui] diamond 339 80.9 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Cladocopium Cladocopium goreaui
32299544 32299544 PRJNA832865_S_NODE_27899_length_570_cov_2.488934_g22873_i0 PRJNA832865 27899 570 2.488934 14.1869238 Paramarteilia canceri 2844372 SAR_Eukaryotes SAR_Eukaryotes 49.7 4.97e-4   NR MES1902539.1 2844372 g22873 i0 45.8 0.252631578947368 48 26 25.3 0 268 411 84 131 MES1902539.1 hypothetical protein [Paramarteilia canceri] diamond 144 49.7 1 Eukaryota Sar   Endomyxa Ascetosporea Paramyxida Marteiliidae Paramarteilia Paramarteilia canceri
32331196 32331196 PRJNA832865_S_NODE_15119_length_1038_cov_3.226943_g11192_i0 PRJNA832865 15119 1038 3.226943 33.49566834 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 48.1 0.0168   NR KAG9410614.1 112091 g11192 i0 32.1 0.716763005780347 106 67 30.6 3 167 484 24 124 KAG9410614.1 hypothetical protein AC1031_018638 [Aphanomyces cochlioides] diamond 744 48.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;